Tripterygium wilfordii (thunder duke vine): 120008517
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Entry
120008517 CDS
T07256
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
twl03009
]
120008517
Ribosome biogenesis [BR:
twl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120008517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
RYDR_ITPR
Csm2_III-A
Methyltransf_5
DUF6327
Htt_N-HEAT_1
Motif
Other DBs
NCBI-GeneID:
120008517
NCBI-ProteinID:
XP_038714789
LinkDB
All DBs
Position
11:10226212..10251216
Genome browser
AA seq
2713 aa
AA seq
DB search
MATASHAQAVKSLNKSPGRRRFVFKRFSQKLEEIDIDVYRSLDKIKSEPSEGSSFFRDCL
IEWRELNTAEDFISFYEEIMPFVQTLPLVLLHKESVISKLLFRLQMNARLSIDPVLRLIA
ALSRDLQEDFLCFLPRIVDSLVSLLNSGADREPEIIEQIFTSWSYIMMYLQKYLARDIIN
LLSVTLNLRYYPRDYVQEYMAQALSFLLRRVSKEQLEKGVRKLMFEVVEEPLLPRKSGVG
ALLCYAMKGTSSRFHSKADRIVNLLTDDSIFSVGDNLVKGLDAVVEVVIVAFQRLCEELE
PEELNWMWEFVCRRINDCVTTGRLLHLCRLLLLLISTIQFNEGRSVFDYHPILKCVGLLV
QTYIMPSESGNATEVHSSEVVDKVLQLMLCILDGLYSSGDMSSIYECSLEWAPAFKLRNS
SLLSFIKELLLKDTCILHMFKVDILSSMNDLIETYGEEVTCLLLSFCEKMQENPQSCSLF
DGISEEGFSRVCSFLQGAIYSWIQVVNSIKDGNWSSTFIEEPKLALLWGSIRCYSYISNA
QVTPSVLMDLVDALDQLLKIDGENIAGASRNIWTSLIAAALSSYYKGNFYKQSGLEETRK
ALRLAKSYNLSSQVLSAVADYLDHTSGHTLQSDTTLGISHPELQAEKVVDAVGIFAGNLC
KSDKGIRVTTIRILCHYEPLKCEPIKDEQADTKVKNDASQISHLDINNNNVLRLLLSIEE
TPISISTSRTVTLLISKIQMALSTGRVSKTYIPLVLNGLIGIFHNRFNYLWNPASECLAV
LIGKHSDLVWDNFVGYVEYCQSTFQTLGNQQARGNDKISDESSDLVQHFHLFVDPASDST
PCNTVLSLLLQTSQKISSIVESRSRQIVPLFLKFLGYKSDAMLSVGSFNASTCKGKEWKD
VLKEWLNLLRQMRNLKSSYCSHLLKDVLHVRLLDENDAEIQMKVLDCLLMWKDDFLLPYD
QHLKNLICSKQFREELTTWSLDRESSLIEEVHRVYLVPHVIRILMPKVRKLKTIASRKRM
SMHHRKAVLGFIAQLDVDEIPLFFAMLMKPLHIIPNETDGTTNLFWTSFNTGTDELRLSN
CLKYFTRENILALSWKKKYALLHVIEDILVVFDELHISPFLEFLMGCVVRILESCSSSID
AAKALGSSSHVDNNSSINLTLQEEEKTVSNHVQNHATLKQLKDMRSLSLKIVSSVLNKYE
HHDFGCDFWDLFFTSIKPLIDGFKQEGSSSEKPSSLFSCFMAMSRSHKLVLLLYRDKNLV
GNIFSILTVTTASEAVVKCVLKFIDNLLNLDSELEDMDTSVRVNLLSNLEALTSGLHCLF
HSDSAIKRKLVKHPGEMEIRIFKLLSKYISGPSLARKFIDILLPFLTKRVQNSGFYLEAV
QAIRDIIPVLGSDITTKILNAVSPLLVSAELDIRLGICDLLDALAKSDPSVAFMAKLIHE
LNATSPMEMGGLDYSVILNAYEKIGDDLFYTIQEDQALVILSHCVYDMSSEEIILRNSAY
RSLLSFVEFSKMILGQEEIENRHETPEMMKISKGCGTGACVQRIVSKFLLKHVADAMSRA
RSVKKEWIELLREMVLKLPELENLNSLKNLCSEDAEQDFFNNIVHIQKHRRARALSRFRN
VVSMHNISEVQGIINKVFVPLFFNMLIDVQNGKGENIRNACVEALGSISGAMNWRSYYAL
LTRCFREMDKNPDKQKVLLRLICSVLGQFHFSVVDPSKIVKDRLENFSGADTMVTDSSAQ
LKRNSSSPMVADIQTCLHKTLLPKIQKVLNSDSDKVNVTIFVVALKVLKLLPTDIMDSLL
PNVIHRISNYLKNRLQSIRDEARSALAACLKELGLEYLQFIVRVLRATLKRGFELHVLGY
TLNFILSQFISDPISGKLDYCLEDLLSVIENDILGDVAEEKEVEKIASRMKETRKQKSFD
TLKMVAQTVTFKIHAEKLLSPVTAHMQKFRIPKVRAKLESMLKHVAAGIEHNPSVNQTDL
FIFIYGLIEDGSNEETGQLEKLSTGNTKNHPTTIVNAKANSRQTISAKSACSHLITVFAL
GMLRNRIKNIKSDKNGELLSMLDPFVKLLGICLSSKYEDVLSASLRCLTPLIRLPLPSLE
SQADKIKMTLLDIAQSSVSSSSPLTESCLRLLTVLLRCTKITLSSDQLHLLIQFPLFVDL
EKNPSFVALSLLKAIVSRKLVVHEIYDIVIQVAELMVTSQVESIRKKCSQILLQFLLDYH
LSEKRLQQHLDFLLANLRYEHSTGREAVLEMLHAIIMKFPKSILDEQSQTVFVHLVVSLA
NDTDNKVRSMTGTVIKHLIGRIEPHSLLSILQYSLSWYLGEKQQLWSTGAQVLGLLVEVM
DDSFQVHINSVLPVIRRILQSAMNAVANRQLDLSDENNVHFWKEAYYSLVLLEKLLHHLH
NLSFEKDLEDIWEAVCEFLLHPHAWLRNISSRLVALYFASATQAGRENHEKSLGSYFLMR
PSRLFMIAVSLCCQLKTLPSDDSAGNLITQNIVFATCAVHALMGQVECAHPHKFWSNLEQ
HEQGQFLKAFQLLDSRKERGLLLSLASGACYQREGVDFENLRHLLVSCLLKTMGAISLNM
EAAQMRIVFNTFQRISSQISQDDCQQYAFQLLLPLYKVCEGYSGKVIPDDLKQLAEEVCR
SIRDSLGIQNFVHVYNEIRRNLKAKRDKRRQEDKVMAVVNPTRNAKRKLRISAKHRDHKR
RKIMSMKMGRWMK
NT seq
8142 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcttcacatgctcaggcggtcaagtctctcaacaaatctcccggccgtcgt
cgctttgttttcaagagattctctcagaaactagaagagattgacatcgatgtctatcga
agccttgacaaaattaaatcagagccatcagagggttcttccttcttccgggactgtctc
atagaatggagggagttgaatactgcagaggactttatttcattttatgaggaaattatg
ccatttgtacagacattacccctggtgctgttgcataaggaatcggttatatcgaaactt
ctttttagattgcaaatgaatgcaagactctcaattgatcctgttctaaggttgattgca
gctttatcaagagatcttcaggaggattttctttgctttttgccaaggattgtcgactct
ttggtgtctctccttaattctggtgctgatagggagccagagatcattgagcagattttt
acatcatggtcatatataatgatgtatctgcaaaaatatcttgccagggacattattaac
ttgctcagtgttacgttgaatctaagatactacccaagagactatgttcaagaatacatg
gcacaagcattgtcatttttgctaagaagagtgtcaaaggagcagcttgaaaaaggcgtt
agaaagctcatgtttgaagtcgtggaggaaccattacttcccaggaaatccggagtgggt
gcattgctttgttatgctatgaaaggaacatcatcaaggtttcattcaaaagctgatcga
atagtgaacttgttgaccgatgattcaatattttccgtgggagataatttggtcaaaggt
ttagatgctgttgttgaagtagtgatcgtagcttttcaacgattatgtgaggaactagaa
cctgaggagttaaattggatgtgggaattcgtttgccggcgaataaatgactgtgtaact
actgggcgattgttgcatctatgccgcttgttattactgcttatttctaccatacagttt
aatgaagggcgtagcgtttttgattaccatccaatacttaaatgtgtgggtttacttgtg
caaacttatatcatgccttctgaatctggtaatgcgacggaagttcattcatcagaagtt
gttgataaagttctgcaattaatgctatgcattcttgatgggctctatagttccggggac
atgtcttctatctatgagtgttctttggaatgggcccctgcttttaaattacggaactca
agtttgttgtcttttattaaggaactgttactgaaggatacttgcattctacatatgttc
aaggttgacatcttaagctcgatgaatgatttaatagagacctatggtgaggaagttaca
tgcttattgttgtccttctgtgagaaaatgcaagagaatcctcagagctgtagccttttc
gatggaatatcagaagaggggttttcaagagtttgcagcttcctgcaaggtgctatttac
tcttggattcaagtagtaaatagtattaaggatgggaattggtcatcaacttttattgaa
gagcccaagttagctctgctctggggaagtatacgttgctattcttacatatcaaatgct
caagttactccttctgtgctgatggatctggtagatgctcttgatcaactattgaaaatt
gatggtgaaaacattgcaggtgcttctagaaatatttggaccagcctaattgctgctgct
ttaagttcctattacaaggggaatttttataagcaatctggtcttgaggaaacaagaaag
gctttgcgtcttgcaaaatcatataatttatcttctcaagtattatctgcagttgctgat
tatttggatcatactagtgggcatacgctgcaatcagacaccacccttgggatatctcat
cctgagcttcaagctgagaaggttgttgatgcagtaggcatatttgctggtaatttatgc
aaatcggacaaggggattcgagttacaactatcagaattttgtgtcattatgaacctctg
aaatgtgaacccatcaaggacgagcaagctgatacaaaagtgaaaaatgatgcttctcag
attagtcatctggatattaacaacaataatgttctgcggctcctcctctcaattgaggaa
actcctatttcaatctctacaagcaggacagttaccctattgatatctaaaattcagatg
gccctctctactggcagggtatctaagacttatatacccctcgttttaaatggcttaatt
ggcatcttccacaaccgtttcaattatttatggaacccagcatctgaatgccttgcagtt
cttattggcaagcattctgatcttgtatgggataattttgtcggttatgttgaatattgc
caatccacgtttcaaacacttggtaatcaacaagccagaggcaacgacaaaatatctgat
gaatctagtgatctggtacagcactttcatttgtttgttgatcctgcatctgatagcaca
ccatgcaacacggttttgtccttgttgctccagacttctcagaaaatttcttccattgtt
gaatctcgctctcgacaaatcgtacctcttttcttaaagtttttgggctacaaaagtgac
gctatgctaagtgtgggatcgttcaatgccagtacttgtaaaggcaaagagtggaaggat
gtccttaaagaatggttgaatctgttaagacaaatgcgaaacctaaagtcctcctattgt
agtcatcttctaaaagatgtgctgcatgttaggcttttggatgaaaatgatgctgaaata
cagatgaaggttcttgactgcctgttgatgtggaaagatgatttcttgctcccatatgat
cagcatctgaaaaatttgatctgttcaaaacaattcagagaagaattaacaacatggagt
ttagacagagaatcgtccctcattgaagaagtccacagagtttatcttgtacctcatgtc
atccgtattctgatgccaaaagtgcgaaaattgaagactattgcctctcgaaagcgaatg
agcatgcaccaccgaaaggcagttcttggtttcatagctcaacttgatgtggatgagatc
cctcttttctttgcaatgctcatgaagcccttgcacattattccaaatgagactgatggt
actactaatttgttttggacctctttcaacactggtacggatgagttacgtttatcaaat
tgcttgaagtatttcaccagagaaaatatacttgccctgtcttggaagaagaaatatgct
ttgctgcatgtgattgaagatattctagttgtttttgacgaattgcacatcagtcctttt
cttgagtttttaatggggtgtgtggttcggatattggaaagctgctcctcaagcattgac
gctgcaaaggctcttgggtcttcttctcatgtagacaataattcaagcatcaacctaact
ctacaagaggaggaaaaaacagtgtccaatcatgtccagaaccacgcaaccctgaagcag
ctaaaggacatgcgatctttgagcctaaaaattgtttcctctgttctcaacaagtatgaa
catcatgattttggttgtgatttctgggacctattctttacatcgataaaacctttaatt
gatggtttcaagcaggagggctctagcagcgagaaaccaagttcactgttctcgtgcttt
atggccatgagtagaagccacaaactggttttgctgctgtatcgggataagaatctggtt
ggaaatattttttcgatccttacagtcacgacagcctcggaagctgttgtaaaatgtgtg
cttaaattcattgacaacctcttgaacctagacagtgagctggaagacatggacacttct
gttagagtaaatctactttcaaaccttgaggcacttacctctggcttgcattgtcttttt
cacagtgatagtgctattaagaggaaattggtcaaacatcctggggagatggaaattaga
attttcaaattgttatcgaagtatataagtggcccatctcttgcaagaaaattcatagat
atcttgctgccattcttaacaaagagagttcaaaattcgggtttctatcttgaagctgtg
caagccattcgagatatcataccagtattagggagtgatatcactacaaaaatacttaat
gcagtttcaccactcctagtgtctgctgaactcgatatacggttgggtatttgtgatctt
cttgatgctcttgctaaatccgacccttctgtggcctttatggcaaaactcatccatgaa
ttgaatgcaacctctcccatggaaatgggtggcctcgactatagtgtcatactcaatgcc
tatgaaaagattggagatgatttattctacactatccaagaagatcaagcactagtcatt
ttgtcgcattgcgtgtatgatatgtcttcagaagaaataatcttaaggaatagtgcttat
aggtctttgctctcatttgttgagttttctaagatgattcttggccaagaggagattgag
aatcgacatgaaacacctgaaatgatgaaaattagtaaaggctgtgggacaggagcttgt
gttcagcgcatagtaagcaagtttcttttgaagcatgtagcagatgcaatgagcagggca
cggtctgttaaaaaggaatggattgagttattgcgagagatggtgttgaagcttcctgaa
ctggaaaatcttaattccttgaaaaacttgtgctcagaagatgcggaacaagattttttt
aacaatattgttcacatacagaagcataggagagcaagggcactgtcacgcttcagaaat
gtagtcagtatgcataatatctcagaggttcaggggattatcaataaggtgtttgtacca
ctctttttcaatatgttaattgatgtacaaaatggaaagggagaaaatattagaaatgca
tgcgtggaggcacttggttcaatctctggtgctatgaactggagatcgtactatgcctta
ttgactagatgttttcgagagatggacaagaaccctgacaagcaaaaggtcttgttgcgt
ctgatttgctctgttttgggccaatttcatttctctgttgttgatcccagtaaaatagtc
aaagatagattggagaacttttcaggtgctgataccatggtcactgattcctcagctcag
ttgaaaagaaatagtagctctcctatggtcgctgacatacagacatgtctccataaaact
ctgcttccaaagatacagaaagtactaaattctgattcagataaggtcaacgttactatc
tttgtagttgcattgaaagtactaaagttgcttcctacagacataatggattcgctgctt
cctaatgttattcatcgcatttcaaattatttaaagaatcgtttgcaaagcattcgagat
gaagctaggtctgctttagctgcttgtttgaaggagcttgggctggagtacctgcaattt
attgttagggttttgcgagcgactttgaagagaggatttgagctgcatgtattgggatac
acgctcaattttattttgtcacagtttatttcagatcccattagtgggaagttggattat
tgtctagaagatcttctctctgttatagagaatgatattcttggagatgttgctgaggag
aaagaggtggaaaagattgcttctagaatgaaggaaactaggaagcagaagtcctttgat
accttaaaaatggttgcccagactgtaacgttcaaaatccatgccgagaaacttctttca
cctgttacagctcatatgcagaagtttcgaataccaaaagtgagagcaaaattggaaagt
atgttaaaacacgtagctgctggtattgaacataacccatctgttaaccagacagatctt
tttatctttatatatggcctaattgaggatggaagtaatgaagaaactggtcagcttgag
aagctatctactgggaacacgaaaaaccatcccacaacaattgttaatgcgaaagctaat
tccaggcaaaccattagtgccaaatcagcatgttcacatcttattacggtgtttgctcta
gggatgctgcgcaaccgcataaagaacataaagtctgacaaaaatggtgaactgttgtca
atgttggatccttttgtcaagctgctaggcatttgcttgagctctaagtatgaagatgtt
ttatcagcatcccttaggtgcctaactccattgataaggttgccattaccatcccttgaa
tctcaagctgataaaataaagatgacactgttggatatcgctcaaagttctgtcagttct
agcagtcctctaacggaatcttgcctacgcttgttaactgtgctcctgcgttgcaccaaa
attacactttcctcggatcaattacatctattaattcagtttcccttgtttgtcgatctt
gaaaagaatccttcttttgttgccctttctcttcttaaggcaattgtcagccgcaagcta
gttgttcatgagatatatgacattgtaattcaagttgcggaattgatggtgacgagtcag
gtggaatcaattcggaagaaatgcagtcagatattattgcagttcttactcgattatcat
ctctcagaaaagcgtttgcaacaacacttggattttctacttgccaatttaaggtatgaa
cattctactggaagagaagctgtgcttgaaatgctccatgcaataataatgaaatttcca
aaaagcatattggatgagcaatcacagacagtttttgttcatttggtggtttccttggca
aatgatactgataataaagttcgctccatgactggcacggttataaagcatctcataggc
cgtatagaaccgcattcacttctttccatcctccagtacagtttatcgtggtatttggga
gaaaagcagcagctgtggagtactggtgcacaggtcttggggctactggttgaagtaatg
gatgatagcttccaggttcatataaatagtgtattgccagtgattagacgcattttgcag
tctgctatgaatgctgttgccaacagacagttggatctttctgatgaaaataatgttcat
ttctggaaagaggcatattattccctagttttgctggagaagctgctacatcacttgcat
aacctaagtttcgaaaaggatcttgaggatatatgggaggctgtctgtgagttcctgttg
cacccgcatgcatggctgcgtaacatatcaagccgccttgtagccttgtattttgcctct
gcaactcaggctggcagagaaaatcatgaaaagtcattgggaagttattttcttatgaga
cctagtagactttttatgattgctgtttctctttgctgccagctgaagacacttccttca
gatgattctgctggcaatctgattacacaaaatattgtttttgcaacttgtgctgtgcat
gctttgatgggacaagtggaatgtgcacaccctcataagttctggtctaatctggagcag
catgaacaaggccaatttcttaaagcttttcagttgctcgactccagaaaagagagaggc
ctccttttgtctcttgcctctggtgcatgttaccagagagagggggtcgactttgagaat
cttcgtcatttacttgtttcttgtttgcttaaaactatgggagccatttcacttaatatg
gaggctgctcagatgaggatagtcttcaatactttccaaagaatttcttcccagatcagt
caagacgactgccagcaatatgcatttcaacttctgctgcccttgtataaagtttgcgag
ggatattctgggaaagtcattcctgatgatttgaaacaattagcagaagaagtttgcaga
agcatacgagatagtttggggatccagaattttgtccatgtttacaacgagatcagaaga
aatctcaaggcgaagagggataagagaagacaagaagacaaggtcatggctgtagtgaat
ccaacgcggaatgccaagaggaagctgaggatttcagcgaagcatcgcgaccacaagaga
aggaagataatgtctatgaaaatgggaagatggatgaagtga
DBGET
integrated database retrieval system
