Tripterygium wilfordii (thunder duke vine): 120009269
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Entry
120009269 CDS
T07256
Name
(RefSeq) uncharacterized protein LOC120009269 isoform X1
KO
K06100
symplekin
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120009269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
120009269
03019 Messenger RNA biogenesis [BR:
twl03019
]
120009269
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120009269
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120009269
U7-dependent histone pre-mRNA processing factors
120009269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
WI12
Motif
Other DBs
NCBI-GeneID:
120009269
NCBI-ProteinID:
XP_038715710
LinkDB
All DBs
Position
11:complement(1224846..1251357)
Genome browser
AA seq
1329 aa
AA seq
DB search
MAAPSRDQALSLIAASKNHGDLAVKLSSLKQAKDILSSVDPSVATDLFPYLVELQSSPES
LVRKVLVEIIEDVGLKALEYCSMLIPVILALVRDGDPIVARQSIVSGSKFYCSIVEEMVL
QFHRRVNVDRWLEELWMWMVKFKDVVFSIALQPGSAGTKLLALKFLETYILIFAIDTTDS
EKPAYEATAGGGRTFNVSCLLGGHTILDLVAVMSEVNKSLGVLLDLLRSAGSIPGLLTIA
VVNCLVAIARKRPIHYDTILSALFNFDPNFEGVGGCHTASIHYALRTAFLGFLRCTYSPI
VESREKLLRVLRAMNAGDAADQVIRQVDKMMKNSERVSREAWLRRDDQPSSQLPGFGDLS
RKISMLQDNDDLAYEVPSKRIRHGPNTPSALQVQVNGYGQDSVSVNEVSPNVPLFDSDLT
PVEKMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMRHLPKTPPPVTQLGSLH
ITQQNGSQSSSAQVVAQSVSANSVQSPVPTAQVPFSSVSTISSSLSETSAVNNFPADSKR
DPRRDPRRLDPRRVVMPTGIPSIHVAEDNSPVPFESYGSSSLSKPVSFPAITSVETQMPQ
LMSNADVNDNLLGSTLFVETGQENPEEEFVRKIEEALPIPEVNASDQAHSPLRIADEHSG
SSRLSDCEITYEDDISALLEADQNSPAISNTSASEETCLDLPVLPMYVDMTEEQQTSMRK
LAVERIIKSYEHLDGTNSSKTWMAILARLVAQLDAGDDVVVVLQKKIVLDHEQQKGHELV
LYILYHLHSLMISDSVETASVAAIAYENFLLAVAKSLLDILPASDKSFSRLFAEVPFLSD
ASLKLLDDLCYSNVFDPNGNEIRDGERVTQGLGAVWGLILGRPNYRQACLSIALKCAVHT
QDDIRAKAIRLVANKLYPLNYISEHIEKYATDKLLSAVDQHALGTELSQSASGDRRAEEE
FARHETSTPENENMNGAQPVIQSVATVSFPEAQRLISLYFSLCTKKPILLRLAFDIYGKA
PKGVRQAFHRHIPILIRAVGPFYSELLNVISDPPQGSEDLLTLVLQILTQETTPSPDLIA
TVKRLYETKLKDVSILIPMLSLLPKDEVLPIFPRLVDLPMEKFQTALAHILQGSAHTGPA
LTPAEVLVAIHDISPEKDGLALKKITDACSTCFEQRTVFTQQVLAKALNQMVDQTPLPLL
FMRTVIQAIDAFPKLVDFVMEMLSKLVNRQVWRMPKLWVGFLKCVSQTQPHSFHVLLQLP
SPQLESALNKHAMLRGSLAAYANQPSRKASLPRSTLDVLGLANESYLPDSSSLQPSDITS
SVHGATMTR
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggccgctccttctagggaccaggcactttctctcatcgccgcctcaaagaaccacgga
gatttggccgttaagctctcgtctctaaagcaagccaaagatattttgtcgtccgtagat
ccttccgtcgcgaccgatcttttcccgtacttggtcgagctacagtcctcgcccgagagc
cttgttcgaaaagttcttgtcgagataattgaagatgttggtttaaaggcattggaatat
tgttctatgctaatacctgtcatactggcccttgtaagagatggtgaccctatcgttgca
agacagtcgattgtcagtggctcgaagttctactgtagcattgtagaggaaatggtgttg
cagtttcatcggcgtgttaacgtggaccggtggcttgaagaactatggatgtggatggtt
aagtttaaggatgttgtcttttctattgctttgcagcctggttctgctgggacgaaattg
ctagcattgaagtttctggaaacatatattttaatttttgcaattgacaccactgactct
gaaaagcctgcatatgaagctacagcaggaggtggacggacatttaatgtttcctgtcta
cttggtggccacactattttggatctggttgctgtgatgtctgaagtaaataagtctctt
ggtgttttgttggatttgttgcgatcagctggtagtatccctggtttattgacaattgct
gttgtcaattgtcttgttgccatagcaaggaagaggccaattcactatgatacaattctt
tctgcattgttcaattttgatcccaactttgagggggtggggggttgccatactgccagc
atccattatgccttgagaacggcctttctcggatttctaaggtgtacttattcacccatt
gtagagtcaagagagaaattgctcagggtgttacgagcaatgaatgcaggggatgctgct
gaccaagttatccgacaagttgataaaatgatgaaaaatagtgagcgtgtatctcgtgaa
gcttggctacgaagggatgaccaaccatcaagtcagcttcctggctttggagatctgtca
aggaaaatatccatgcttcaggacaatgacgaccttgcttatgaggtgccttccaagcga
attcgtcatggtccaaacactccctcagcgttgcaagttcaagtgaatggttatggccag
gattctgtttctgtgaatgaagtgtctcctaatgttcccctgtttgatagtgatttgact
ccagtggaaaaaatgattgcgatgattggtgcactgcttgcggaaggagaaagaggggct
gaatctcttgaaattcttatttcaaatattcatcctgacttgctggctgatattgtgatt
actaatatgcggcacttgcctaaaacccctccaccggtaacacagcttgggagtttgcat
ataactcaacaaaatggctctcaaagtagttcagcacaggtggtggcgcaatctgtttca
gcaaattctgtgcaatctccagttcccactgcacaagtacctttttcttcagtttccaca
atcagttcatcgttgtccgagacatctgctgtcaataattttcctgcagattctaaacgt
gatccaagaagggatccacgtcgccttgatccaaggcgtgttgtgatgcctacaggaata
ccttctatacatgttgctgaggataacagtcctgtgccttttgagtcatatggctctagc
tccttgagcaagcctgtttcatttcctgctataacatctgttgaaactcagatgccgcag
ttgatgtccaatgcagatgtcaatgataatcttttggggagtacattgttcgttgaaact
ggtcaagaaaatcctgaagaagagtttgtgagaaaaattgaggaggccctcccaattcca
gaagtcaatgcttcagatcaggcacattctcctcttcgcatcgctgatgagcattctggt
tcatcaaggttgtctgattgcgaaataacatatgaagatgatatatcagctttgctggaa
gccgatcagaattccccagctatttcaaacacatcagcatcggaggagacttgtttggat
ttacctgtgctcccaatgtatgttgatatgaccgaagaacagcaaacaagtatgagaaaa
ctggcagttgaacggattatcaaatcgtatgagcatctagatggtaccaactcaagcaag
acatggatggcaatacttgcgagattggttgctcagcttgatgcaggtgatgatgtggtg
gtggtcctgcaaaaaaaaattgttttggatcacgaacagcaaaaggggcatgagcttgtg
ttgtatatcctctaccatctgcattctctcatgatctcagattcagttgaaaccgcttcc
gttgctgctattgcttatgaaaactttctattggcagtggccaaatctttactggatatt
ttacctgcctcagacaagtccttcagtcgactttttgctgaagttccatttttgtctgat
gcttccttgaaattgttagatgatctctgctattcgaatgtttttgatcccaatggaaat
gaaattcgtgatggtgagcgtgtcactcaaggccttggtgctgtgtggggtttgattttg
gggcgtccaaattatcggcaagcctgcttaagtatagctttaaagtgtgctgttcataca
caagatgatattcgggcgaaagctattcggctggtggcaaacaaactctatccactgaac
tacatatcagaacatattgaaaaatatgcaacagataagctactttctgctgtggatcag
cacgctttaggtacagagctttcacagtcagcgtcgggcgacagaagagctgaagaagag
tttgcaagacatgaaacatcaactcctgaaaatgagaatatgaatggtgcacaaccagtc
atccagagcgtggcaacagtgtcatttcctgaagcccaacgcctaatttcgctgtatttt
tctttatgtacaaagaaacctattcttcttcgacttgcatttgatatttatgggaaagct
ccaaaaggtgtgaggcaggcttttcaccgtcatattcctatactcataagggctgtaggg
ccattttattctgaattgcttaatgtaatatctgatccaccacaagggagtgaagatctt
ttgacactggtgttgcaaatattgactcaggaaacaacaccgtctcctgatcttatagcc
actgttaaacgtttatacgagactaagttgaaggatgtgtcaattcttattccaatgctc
tcattgcttcccaaggatgaggttttacctattttccctcggctggttgaccttcccatg
gagaagttccagacagcacttgctcatatattacagggttcagctcatacaggtccagct
ttaacacctgcagaagttttggttgccattcatgatatcagtcctgagaaagatggtctt
gcactgaagaagataacagatgcttgctcaacttgttttgagcaacggacagttttcaca
caacaggtcttggcaaaggccttgaatcagatggttgatcaaactcctctgcctcttctt
ttcatgagaactgttattcaggcaattgatgcatttcccaaactggtcgattttgttatg
gagatgctttccaaacttgtgaatagacaggtatggagaatgccaaagttgtgggtaggg
ttcctaaagtgtgtgtcacaaactcagccacactctttccatgtgttgttacagctacca
tctcctcaacttgaaagtgctctgaacaagcatgctatgctccgaggctccttggctgct
tatgccaaccaacctagtaggaaagcttcactacctagatcaacgctcgatgttcttggt
cttgccaacgaatcatatttgccagatagctcatctttgcagccttcagacattacctct
tcagttcatggagcaactatgacaagataa
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