Tripterygium wilfordii (thunder duke vine): 120009451
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Entry
120009451 CDS
T07256
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120009451
09123 Folding, sorting and degradation
03018 RNA degradation
120009451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120009451
03041 Spliceosome [BR:
twl03041
]
120009451
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120009451
mRNA cycle factors
Stress granule specific factors
120009451
Spliceosome [BR:
twl03041
]
Complex C
Other components
Complex C specific factors
120009451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_3
RRM_Nup35
RRM_7
SET_assoc
RRM_RdRP1_2
RRM_MARF1
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
120009451
NCBI-ProteinID:
XP_038715989
LinkDB
All DBs
Position
11:12148827..12154011
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AA seq
655 aa
AA seq
DB search
MSQLQVQHQAPVSAPNGVVAASPAANEFVTTSLYVGDLDQSVTDSQVYDLFSQVGQVMSV
RVCRDLSTRRSLGYGYVNYSNTQDAARALDVLNFTPLNSRPIRVMYSHRDPSIRKSGAGN
IFIKNIDKAIDHKALHDTFSSFGTILSCKMATDASGQSKGYGFVQFENEVSAQTAIDKLN
GMLINDKQVYVGQFLRKHERDSTLSNIKFNNVYVKNLSESTTDEDLKTIFGEYGPITSAV
VMRDGDGKSKCFGFVNFEHADDAAKAVEALNGKKFDDKEWYVGKAQKKIEREIELKGKFE
QSIKDTVDKYQGMNLYIKNLDDSINDEKLKELFSEFGTITSCKVMCDPSGISKGSGFVAF
SSPEEASRALADMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMTPPVAPRMPM
YPPGAPGLGQQFLYGQAPPAIIHPQAGFGYQQQFVPGMRPGGGPMPNFFVPLVQQGQQGQ
QRPGGRRGSGPVQQPQQPVPLMQQQMVPRGGRSYRYLPGRNVPDAQVPGVAGGMISVPYD
VGGMPRRDAPVGQPLPITALASALANATPEQQRMMLGESLYPLVDQLEHEAAAKVTGMLL
EMDQTEVLHLLESPDALKAKVAEAIEVLRNVAAEQQANNQADQLASLSLNENLVS
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaacttcaagtgcagcatcaggctccagtatcggcaccgaatggtgtggtggcg
gctagccctgcagcgaatgagtttgtgacgacctctctgtatgttggagatcttgaccag
agcgtgactgactcacaggtctacgatctcttcagccaggttggccaggtcatgtcagtt
agggtttgtagggacctaagcacccgccgatctcttggatatggttatgtcaactacagc
aatactcaggatgctgcaagggctttggacgtactgaacttcactcctctcaatagcagg
ccaattagggtcatgtattcacatcgggaccctagtattcgtaagagtggagctgggaat
atatttatcaagaatattgacaaagctattgaccacaaagctttacatgatacattttct
tcatttgggaccattctttcttgcaagatggctactgatgcttctggccaatctaaaggc
tatggttttgttcaatttgaaaatgaagtgtctgcacagactgcaatagataagttaaac
ggcatgcttataaatgataagcaagtgtatgttggacagtttctccgcaagcatgaacga
gatagtactttgagtaacataaaatttaataatgtttatgtgaaaaatttatccgagtca
acaactgatgaggatctgaagacaatttttggcgaatatggaccaattacaagtgctgta
gtcatgagggatggagatgggaagtcgaaatgttttgggtttgtcaattttgaacatgca
gatgatgctgctaaagctgttgaagctcttaatggcaagaagtttgatgacaaggaatgg
tatgttgggaaagcccagaaaaaaattgagagagagattgaactgaaggggaagtttgag
cagagtattaaagacactgtagacaagtatcaagggatgaatttgtatattaagaatttg
gatgacagcatcaatgatgaaaaactaaaggaattattctccgagtttggtacaatcact
tcatgcaaggttatgtgcgaccccagtggtattagtaaaggttctggatttgtcgccttc
tcttctcctgaagaagcatctcgggctcttgctgacatgaatggaaaaatggttgttagc
aaaccactctatgttgcactggctcagcggaaagaagagaggagagcaaggctacaggca
caattttctcaaatgagacctattgctatgactcctccggttgctcctcgtatgccaatg
tatccacctggtgccccggggcttggtcaacaatttttgtatgggcaagcacctccagct
ataattcatccacaagctgggtttggctatcagcagcagtttgttcctggaatgaggcct
ggtggggggccgatgccaaatttttttgttccactggtccagcagggtcagcagggccag
cagcgaccaggggggcgacgtggatctggacctgtgcaacaacctcagcaaccagtccca
cttatgcagcagcagatggtacctaggggtggacgctcataccgttatctgcctggtcgc
aacgtgccagatgctcaagtaccaggtgttgctggagggatgatttctgttccgtacgac
gtgggtggcatgccaaggagagatgctccagtaggtcaacctctgcctataacggcattg
gcttctgccctggcaaatgcaacacctgaacagcagaggatgatgttgggtgaaagttta
tacccccttgtggatcagttggagcatgaagctgcagccaaggtcacgggcatgcttctg
gagatggaccagactgaggttttacatctgcttgagtcacctgatgctttgaaggctaaa
gttgcagaggccatagaggtcctgaggaatgtagctgctgagcagcaggcaaacaatcaa
gctgatcagcttgcctcactctccttgaatgaaaatcttgtctcttga
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