Tripterygium wilfordii (thunder duke vine): 120009922
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Entry
120009922 CDS
T07256
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03420
Nucleotide excision repair
twl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120009922
09124 Replication and repair
03420 Nucleotide excision repair
120009922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
twl04121
]
120009922
03400 DNA repair and recombination proteins [BR:
twl03400
]
120009922
Ubiquitin system [BR:
twl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120009922
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
120009922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD_LRWD1
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_Nup120_160
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_LRRK2
Beta-prop_VPS8
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
120009922
NCBI-ProteinID:
XP_038716584
LinkDB
All DBs
Position
11:11745842..11751348
Genome browser
AA seq
442 aa
AA seq
DB search
MWREIGDRETGRILPNSFTNRVKSSRIRTLQLSNNKDIVSAHRGAINSLQVDLTEERYLL
SGSSDASAAVYDVQRATDYEGGGVIAKHRCLFAVDKKHEHGHKYAISSAIWYPIDTGLFI
TSSYDHYIKVWDTNSTQVVVNFKMPGKVHRAAMSSLATSHMLIAAGTEDVQVRLCDIGSG
AFAHTLSGHRDGVMTLEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQTQLGRRL
PIRTCSTMNTDSESRNLSPKSRTPQRRSIRKSEKQSLLDRTSAKGLVRQRLHPGMLSSQD
HATAHYGAITGLKITEDGMYLLSAGSDSRIRLWDIESGCNTLVNFETMRLQTSKAIQLAT
SRDSALAFVPCMTAVKAFDFWSGKTYLTLCAHYEYVNCCWFSSQDQELYTGGNDRQIIVW
SPSRLMPNENGGDSQDQDNWSD
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtggagggagatcggggacagagaaaccggtagaatcctgccgaattcgttcactaat
cgggtcaaatcgagtcgtatccgcactcttcagctctctaacaacaaagacatcgtctct
gctcacagaggcgccatcaattcgcttcaggttgatttgacagaggagcgatatttgtta
tctggttcgtcagatgcatcagctgctgtttatgacgttcaaagggctacagattatgaa
ggaggtggcgttattgccaagcaccgttgtctatttgctgttgacaagaaacatgaacac
ggacataaatatgctatatcctcagccatatggtatcctatagatacggggctattcatt
acaagctcatatgaccattatataaaagtatgggatacaaattccacgcaggtggtagtg
aatttcaaaatgccgggaaaggttcatagagctgccatgtcttcattggcaacatctcac
atgctaatagctgctggaactgaagatgttcaagttcgtctttgtgatattggttctggt
gcattcgctcacacattatctggtcatcgtgatggtgttatgacattagaatggtctact
tccagcgagtgggttctggtaactggtggatgtgatggcgcaatacgtttttgggatatc
agacgtgctggatgctttcttgttctagatcagtcccagacccagcttgggagacgcctg
cctattcgaacatgctctacgatgaacacggattctgaatcaagaaatttgtctcctaag
tcacgcacaccacaaaggagatccattcgtaagagtgaaaaacaatctcttcttgataga
acctctgccaaaggacttgtcaggcagagattacatcctgggatgttgtctagtcaagat
catgcaacagctcattacggtgcaatcacgggcttaaaaataactgaagatggcatgtat
cttctgagtgcaggatctgattcaagaatacgtttgtgggacattgaatctggttgcaac
acacttgtgaattttgagacaatgcgcctccagaccagcaaagctattcagctggccaca
agccgggattcagctcttgcttttgttccgtgcatgacagctgtgaaagcattcgatttc
tggtcaggtaagacatacctgacactttgtgcccactatgaatacgtcaactgttgctgg
tttagttcgcaagatcaggagttgtatactggtggcaatgataggcaaattattgtatgg
tctccatcgagattgatgcccaatgagaatggaggggattctcaggatcaggataattgg
agcgactga
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