Tripterygium wilfordii (thunder duke vine): 120010897
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Entry
120010897 CDS
T07256
Name
(RefSeq) uncharacterized protein LOC120010897 isoform X1
KO
K06100
symplekin
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120010897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
120010897
03019 Messenger RNA biogenesis [BR:
twl03019
]
120010897
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120010897
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120010897
U7-dependent histone pre-mRNA processing factors
120010897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
FEZ
Motif
Other DBs
NCBI-GeneID:
120010897
NCBI-ProteinID:
XP_038717736
LinkDB
All DBs
Position
12:12016980..12039828
Genome browser
AA seq
1330 aa
AA seq
DB search
MAAPSRDQALSLLAASNNHGDLAVKLSSLKQARDILSSVDPSLAADLFPYLVELQSSPEG
LVRKVLVEIIEDVGLKALEYCSMLIPVLLALVRDGDPIVARQSIVSGLKFYCRIVEEMVL
QFHRRRKVDQWLEELWMWMVKFKDVVFAIVLQPGSAGTKLLALKFLETYILIFTIHTTDS
EKPAYEAIAGGGRSFNVSCLLGGHPILDPVVMMSEVNKTLDVLLGLLLSAGSIRGSLTIA
VVNCLAAIARKRQIHYDTILSALFNFDPNFEGVGGCHTASIRYALRTAFLGFLRCTNSPI
VESRERLLRVLRAMNAGDAADQVIRQVDKMMKNSERVSRETRLGRDDQPSSHLRDFGDLS
RKRSMPQDNEDIAYEVAFKRIRHGSNTPSALQVQVNGYGQDSVSVNEMSPNVPQLDSDLT
PVEKMIAMIGALLAEGERGAESLEILISNIHPDLLGDIVITNMRHLPKTPPPLTRLGNLH
ITQQNGSQSISAQVVAPSVSANSVQSPVPTSQVQFSSVSTMSSSLSETSTVNNFPADSKR
DPRRDPRRLDPRRVVMPTGIPSIHVVEDIGAVHFESDGSGSLGKPVSPPAITSVETQMPQ
LMSNADVNDNISGSTLVAETDQGNPEEEFVRKIEDAVPIPEVNASPDQALSPLHVADEDS
DASKLSDGERTYEADSSSFLETNQNSPTISNTSTSEEMCVDLPVLPVYVDMTEEQQISVR
KLAVERIIKSYDYLDGANSCKTWMAVLARLVAQLDAGDDVVVVLQKQIVLDHEWQKGHDL
VLHILYHLHSLMVSDSVETASIGAIAYEKFLLAVAKSLLNILPASDKSFSRLLGEVPFLP
DASLKLLDDLCYSNVFDPNGNEIRDGERVTQGLGAVWGLILGRPNYRQACLSIALKCAVH
SQDDIRAKAIRLVANKLYQLNYMSEHIEKYATDKLLSVVDQHALGIELSQSKSDNRRAEG
EVARHEMSTPEDENTSGAQLVVQNVATVSFPEAQRLISLYFSLCTKKPSLLRLVFDIYGK
APKSVRQAFHRHIPVLIRAVGPFYSELLHVISDPPQGSENLLTLVLQILTQEMTPSADLI
ATVKHLYETKLKDVSILIPMLSSLSKDEVLPIFPRLVDLPIEKFQTALAHILQGSAHTGP
ALTPAEVLVAIHDISPEKDGLALKKIIDACSTCFEQRTVFTQQVLAKALNQMVDQTPLPL
LFMRTVIQAIDAFPKLVDFVMEILSKLVNRQVWRMPKLWVGFLKCVSQTQPHSFHVLLQL
PSPQLESALNKHAKLRGALAAYASQPSRKASVPRSTLAVLGLANESHLPHGSSLHPSDTN
SSVHGSTMTR
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggccgctccgtctagagaccaggcgctttctctactcgccgcctcaaacaaccacggc
gatttggccgtgaagctctcgtctctaaagcaagccagagatattttgtcgtccgttgat
ccttcccttgcggccgaccttttcccttatttggtggagctacagtcatcgcccgagggt
ctcgttcgaaaagtgcttgtcgagataattgaagatgttggtttaaaggcattggaatat
tgttctatgctaatacctgtcttgctggcccttgtaagagatggtgaccctattgttgca
agacagtctattgtcagtggcttaaagttctactgcagaattgtagaggaaatggtgttg
cagtttcatcggcgtcgcaaagtggaccagtggcttgaagaactatggatgtggatggtt
aagtttaaggatgttgtctttgctattgttttgcagcctggttctgctgggacaaaattg
ctagcattgaagtttctggaaacatatattttaatttttacaattcacaccactgattct
gaaaagcctgcatatgaagctatagcaggaggtggacggtcatttaatgtttcctgtcta
cttggtggccaccctattttggatccagttgttatgatgtccgaagtaaataaaactctt
gatgttttgttgggtttgttgctatcagctggtagtattcgtggttcattgacaattgct
gttgtcaattgtcttgctgccatagcaaggaagaggcaaattcactacgatacaattctt
tctgcattgttcaattttgatcccaacttcgagggggtggggggttgccatactgccagc
atccgttatgccttgagaacagcctttctcggattcctaaggtgtactaattcacccatt
gtggagtcaagagagagattgctcagggtgttacgagcaatgaatgcaggggatgctgct
gaccaagttatccgacaagttgataaaatgatgaaaaatagtgagcgtgtatctcgtgaa
actcggctaggaagggatgaccaaccatcaagtcatcttcgtgattttggcgatctgtca
aggaaaagatccatgcctcaggacaatgaagacattgcttatgaggtggctttcaagcga
attcgtcatggttcaaacactccctcagctttgcaagttcaagtgaatggttatggacag
gattctgtttccgtgaatgaaatgtctcctaatgttccccagcttgacagtgatttgact
ccagtggaaaaaatgattgcgatgattggtgcactgcttgcggaaggagaaagaggtgct
gaatcacttgaaattcttatttcaaatattcatcctgaccttctgggtgatattgtgatt
actaatatgaggcacttacccaaaacccccccaccgctaacacggcttgggaatctgcat
attactcaacaaaacggctctcaaagtatttcagcacaggtggtggcaccatctgtttca
gcaaattctgtgcaatctccggttcccacttcacaagtacagttttcttcagtttccaca
atgagttcttcgttgtccgagacatccactgtcaataattttcctgcagattctaaacgt
gatccaagaagggatccacgtcgtcttgatccaaggcgtgttgtgatgcccacaggaata
ccttctatacatgttgtcgaggacattggtgctgtgcattttgaatctgatggttctggt
tccttggggaagcctgtttcacctcctgctataacatctgttgaaactcagatgccgcag
ttgatgtccaatgcagatgtcaacgataatatttcgggaagtacattggtcgctgaaact
gatcaaggaaatcctgaagaagagtttgtgagaaaaattgaggatgctgtcccaattcca
gaggtcaatgcttctcctgatcaggcactttctcctctccatgtcgctgacgaggattct
gatgcgtcaaagttgtctgatggcgaaagaacatatgaagctgattcatcatcttttctg
gaaaccaatcagaattccccaactatttcaaacacttctacatctgaggagatgtgtgtg
gatttacctgttcttccagtgtatgttgatatgactgaagaacaacaaataagtgtgaga
aaactggcagttgaacgaattatcaaatcgtatgattatctagatggtgccaactcttgc
aagacatggatggcagtacttgcgagattggttgctcagcttgatgcaggtgatgatgtt
gtggtggtgctgcaaaaacaaatagttttggatcacgaatggcaaaaggggcatgatctt
gtgttgcatatcctgtaccatctacattctctcatggtctcagattcagttgaaaccgct
tccattggtgcaattgcttatgaaaagtttctattggcagtggccaaatcgttactgaat
attttacctgcttcagacaagtccttcagtcgacttcttggtgaagttccatttttgcct
gatgcttccctgaaattgttagatgatctctgctattctaatgtttttgatcccaatgga
aatgagattcgtgatggtgagcgtgtcactcagggccttggtgctgtgtggggtttgatt
ttggggcgtccaaattatcggcaagcttgcttaagtatagctttaaagtgtgctgttcat
tcacaagatgatattcgggcgaaagctattagactggtggcaaacaaactctatcagctg
aactacatgtcagaacatattgaaaaatatgcaacagataagctactttctgttgtggat
cagcacgctttaggtatagagctttcacaatcaaagtcggacaacagaagagctgaagga
gaggttgcaagacatgaaatgtcaactcctgaagatgagaatacgagtggtgcacaacta
gtcgtccagaatgtggctacagtgtcatttcctgaagcccaacgcctaatttcgctgtat
ttttctttatgtacaaagaaacctagtcttcttcgacttgtatttgatatttatgggaaa
gctccaaaaagtgtgaggcaggcttttcaccgccatatccctgtactcataagggctgta
ggaccattttattctgaattgcttcatgtaatatctgatccaccacaagggagtgaaaat
cttttgacactggtgttgcaaatattgactcaggaaatgacgccgtctgctgatcttata
gccactgttaaacatttatatgagactaagttgaaggatgtgtcgattcttattccaatg
ctttcatcactttccaaggatgaggttttacctattttccctcggttggttgaccttccc
atagagaagttccagacagcacttgctcatatattacagggttcggctcatacaggtcca
gctttaacgcctgcagaagttttggttgccatccatgatatcagtcctgagaaagatggt
cttgcactgaagaagataatagatgcttgctctacttgttttgagcaacggacagttttc
acacaacaggtcttggcaaaggctttgaatcagatggttgatcaaactcctctgcctctc
ctcttcatgagaactgttattcaggcaattgatgcatttcccaaactggtcgattttgtt
atggagatactttccaaacttgtgaatagacaggtatggagaatgccaaagttgtgggta
gggttcctaaagtgcgtgtctcaaactcagccacactctttccatgtgttgttgcagcta
ccatctcctcaacttgaaagtgctctgaacaagcatgctaagctccgaggtgccttggct
gcttatgccagccaacctagtaggaaagcttcagttcctagatcaacacttgctgttctt
ggtcttgctaacgaatcacatttgccacatggctcatctttgcatccttcagacaccaac
tcttcagtacatggatcaactatgacaagataa
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