Tripterygium wilfordii (thunder duke vine): 120011020
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Entry
120011020 CDS
T07256
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl00040
Pentose and glucuronate interconversions
twl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120011020
Enzymes [BR:
twl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120011020
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF5123
Motif
Other DBs
NCBI-GeneID:
120011020
NCBI-ProteinID:
XP_038717952
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All DBs
Position
2:9289005..9289895
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AA seq
207 aa
AA seq
DB search
MQLGYVDGDAIRLVTATKVWIDHNTLYKCHDGLLDVTRGSTDITISNNWFRNQDKVMLLG
HDDGFLRDKSMKVTVAFNHFGPNCNQRMPRIRHGYAHVANNLYQGWEQYAIGGSMTPSIK
SEANFFIAPKSGNKEVTWRHGSQESGPWKFYSVRDAFENGASFIQTGLGMAKPNYNPEQM
FPVADARFVRSLTRSSGAICCSRSLRC
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atgcagctaggatatgttgatggagatgcaattaggttggtcacagcaacaaaggtttgg
atagaccacaatacactctataagtgtcatgatggtctccttgatgtcacccggggatct
actgatattaccatctccaacaactggtttagaaaccaggacaaagtcatgcttcttgga
cacgatgatgggttcttgagagacaagagcatgaaggtgactgtcgcgttcaatcacttt
ggacccaactgcaaccagagaatgccacggattcgtcatggatatgcacacgtagctaac
aatctctaccaaggatgggaacaatatgccattggaggaagcatgactcctagcatcaag
agtgaagctaacttttttattgcaccaaaatcaggcaacaaggaggtcacatggagacat
ggcagtcaggagagtgggccatggaagttctactccgtgagggacgcttttgaaaatgga
gcttctttcattcaaacaggattaggcatggcaaagcctaattataatccagaacagatg
ttcccagttgcagatgccagatttgtgagatcattgacaagatcgtcaggtgctatatgc
tgctccagatcattacgatgctga
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