KEGG   Tripterygium wilfordii (thunder duke vine): 120011084
Entry
120011084         CDS       T07256                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
twl  Tripterygium wilfordii (thunder duke vine)
Brite
KEGG Orthology (KO) [BR:twl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:twl03036]
    120011084
   03400 DNA repair and recombination proteins [BR:twl03400]
    120011084
Chromosome and associated proteins [BR:twl03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    120011084
DNA repair and recombination proteins [BR:twl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     120011084
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT_EZ HEAT_2
Other DBs
NCBI-GeneID: 120011084
NCBI-ProteinID: XP_038718051
LinkDB
Position
12:complement(2624013..2639014)
AA seq 1151 aa
MAEPSQFTRHIESFVDSSCSATQQTASLDAITLLLKNNVLTLEALVKELGMYLTTTDNII
RARGILLLGEVLIRLSSKPLNNATIHSLIVFFTDRLADWKALRGALVGCLALMRRKSIAG
MVSESDARALGQSYLRNLQVQSLGQHDRKLCYDLLQCLLESYPDAVTSLGDDILYGICEA
IDGEKDPQCLMLGFHIVELLPRLFPDSSGLLESFASELFEVLGSYFPIHFTHPKAEDVSP
KRDDLSNALMLAFSSTPLFEPFSVPLLLEKLSSSLPSAKVDSLKYLSNCTLKYGGDRMAK
HAGAIWSSLKDAIYSSLLVSDLSFVAETLNDQGSQENEITREALKLLQKVFMQNTDVYFS
LLASDEDVKMTFNMISSCKENSEFPLQSKQRLHAVALILFASTKASVASCNRIFESYFPR
LMDDLGLSVENSSVAYNYKSNENCVDPERLNFGALYLSIELLGSCRDLIVSSGERVSETT
YVHEKWCYLLQSFSTSLGKTFSSILATDDGHAQEAYIYLGVKGLQILATYPADYSLVSES
TFEDILMTFISIISMDFSKTLLWKLALNALVHIGSFLNRLHESEKSRTYTRVVINKIVSL
VSLDDLSMPFPLKLEAISHIGTSGLNYMLKIVEGLKEAICANLPRVYVGRHTKSAEIIVQ
VLECFSDKVLPWMQENGGCEESLLRFSVCMWEQIENCMASSVGIHEKGLLDSISKAMKLA
VGCFSAESQTIIVEKAYSVISARSCFPNNEYTFSIPVQLEGLQLAREIGNFSNRDEWTYS
LFASVIIALHPQVHLPNLRTLLRMFMIALLKGHIPAAQALGSIVNKFGLKSNGMEISGDC
TLEEALEIIFCTSFHGSHENGRASQCGQVSNSNHMDLTGLCLGAVNNNLLQIHAIVGLAW
IGKGLLMRGHEKVRDITKVLVEFLQSHDRTDILTLKQGSSENGSVQFSSVMKCAADAFQI
LMSDSEHCLNRKFHAVVRPLYKQRFSFTIMPILQSLILKSDVSSSRFLLYRAFAHVISDT
PLIAILNDAKKLIPMLLDGLTVLSKDREDKDIVYSVLLVLSGVLTDNNGQEAAIENAHIT
INGLTRLIDYPHMTLVRETAIQCLVALSRLPHARIYPMRKQVLQALTRSLDDPKRSVRQE
AVRCRRAWSML
NT seq 3456 nt   +upstreamnt  +downstreamnt
atggcagagccgagtcagttcacccgacacattgaatcgttcgtcgactcgtcctgctct
gcgacacaacagactgcaagtctggatgcgattaccttactcttgaagaataatgtgtta
acactggaagcactggttaaagagttgggaatgtatttgaccacgacagacaacataatt
cgtgctagaggtatccttcttcttggagaagtgcttatacgtctttcatcgaagccactg
aacaatgccactatacatagcttgatagtatttttcactgacagattggcagattggaaa
gctctgcgtggcgcacttgttggctgcttagctttgatgcgaaggaagagtattgcaggt
atggtctctgagagtgatgcaagggctcttggacagtcttatttacgaaaccttcaggtg
caatctttgggacagcatgacagaaagctttgctatgacctgttgcaatgcctattagaa
tcctatcctgatgctgttacctctctgggtgatgacatcctttatggaatctgtgaagct
attgatggagagaaggatcctcaatgcttaatgctaggttttcacattgtggaacttctt
ccacgattatttccagattcatctggattacttgaaagttttgctagtgaactttttgag
gttttagggagttactttcccattcattttacccatccaaaagccgaggatgtttctccg
aagagggatgatctatcaaatgcactaatgttggcattttcttcaacacctctttttgag
ccattttctgttcccttgcttcttgagaaactttcttcctctctgccatcagcaaaggtt
gattctctgaagtatctcagtaattgcacactgaagtatggaggagacagaatggctaaa
catgctggagctatttggtcttcactaaaagatgcaatatattcttccctgctagtttct
gatctatcctttgttgcagaaacactcaatgatcaaggctctcaggaaaatgagattaca
agggaagctctaaaacttcttcagaaggttttcatgcaaaatactgatgtgtacttcagt
ttgctggctagtgatgaagatgtcaaaatgactttcaacatgatatccagttgtaaggaa
aacagtgaatttccccttcaaagcaagcagagactacatgctgtggctctgatccttttt
gcttctactaaggcttctgttgcctcctgcaatagaatctttgaaagttatttccctcgc
ttgatggatgatctggggctttcagtggaaaactcatctgtagcctataactataagtca
aatgaaaattgtgtggatcctgaaaggcttaattttggagctctttatctcagcattgaa
ctccttgggtcatgcagagatctgattgtaagctctggagagcgtgtatccgaaactaca
tatgtacatgaaaaatggtgctacttgcttcagagcttttctacttctttaggcaagaca
ttcagttctatcttggcaactgatgacggccacgctcaggaggcatatatttatctcgga
gtgaaaggtttgcagattctggctacgtatcctgcagactattcattagtgtcggaatca
acatttgaggatattttgatgacattcatatcaattatctccatggatttcagcaaaaca
ttattgtggaaactggctctaaatgcgctcgtacatattggctcttttctcaatagattg
catgagtctgagaagtcacgaacctatacaagggttgttatcaataagattgtctccttg
gtttctcttgatgacttgagtatgccatttcctctcaaattggaagccatttctcacatt
ggtacatctgggctgaactatatgctgaaaattgttgaaggattgaaagaagctatatgt
gccaacctacccagggtctacgttggcagacataccaagtcagctgaaatcattgttcag
gttctggagtgcttctctgacaaggtgcttccatggatgcaggaaaatggaggttgcgaa
gaatccctgttgagattttctgtatgtatgtgggagcaaatagaaaactgcatggcttcg
agtgttgggatccatgaaaaaggccttcttgactcaatatcaaaggcaatgaagcttgcc
gttgggtgtttttccgccgagagccaaaccataatagttgagaaagcttacagtgtaata
tcagccagaagttgttttccaaataatgaatatacattcagcattccagtgcaactggaa
gggttacaacttgctcgagagattggcaacttttccaacagagatgaatggacttattca
ttattcgcatcagtaattatagcacttcatcctcaagtgcacttaccaaatttaagaact
ttattgcgtatgttcatgattgcgctcctcaagggtcacattccagctgctcaggctttg
gggtcaattgttaataaatttggcctgaaatccaatggaatggagatttctggtgattgt
acattggaagaagcattggagataattttctgcactagttttcatggttcccatgaaaat
ggtcgtgcaagccaatgtggtcaagtgagcaatagtaatcatatggacctcactggtcta
tgccttggtgctgtaaacaataatctgcttcaaattcatgccattgttgggctggcatgg
attggaaaaggtttgctcatgcggggtcatgaaaaagttagagacataacaaaggtctta
gtagagttcttacaatcacatgacagaacagatatcttgacattaaaacaaggatcttca
gagaacggttcggtgcagttttcctctgtgatgaaatgtgcagcggatgcttttcaaatt
cttatgagtgactctgagcattgtttgaacagaaaatttcatgcggtagtacgaccgctt
tataagcaacggttttccttcacaataatgcccattctgcagtctttaatcctgaaatct
gatgtgtcatcatcacgatttttgctgtatcgtgcatttgcgcatgtcatatctgacacc
ccactaattgcgatcttgaacgatgcaaagaagctaattccgatgttgctggatggctta
accgtgttaagcaaggatagagaggataaagatatcgtatatagtgtcctgcttgtcttg
tctggagtattgacagataataatggacaagaagctgctattgagaatgctcatattacc
attaatggcctcactaggcttattgattatcctcatatgacgcttgttcgagagacagct
attcagtgtcttgttgccttgtctagactgcctcatgcaaggatttatcctatgcgaaag
caggtactacaagctttaacaagatctcttgacgatccaaagaggtctgttcgtcaagaa
gctgttagatgccggcgtgcgtggtcaatgctttag

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