Tripterygium wilfordii (thunder duke vine): 120011196
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Entry
120011196 CDS
T07256
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl00040
Pentose and glucuronate interconversions
twl01100
Metabolic pathways
Module
twl_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120011196
Enzymes [BR:
twl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
120011196
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
120011196
NCBI-ProteinID:
XP_038718188
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Position
12:complement(728083..735448)
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AA seq
720 aa
AA seq
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MIKDPTAVLPIYEDGAYCLLLTAYCLLLTAYCLVGDLGAHWEWRIDTQAFDLHYILLFLS
MIIMVGSSINVNVMNYGAVGNGVTYDSQAFAKAWAAACGSRTNSVIYVPAGKKFLVKPMT
FQGPCKATTIAMFKESFPISLDHLGMSSTYPPLGSQENIGSLGYGGSSAAVEEVHVHVHH
STFRGTQNGARIKTWQGGKGYARRITFEDITLIDAGNPIIIDQYYCSQQKCRDQLPGLRL
QQKPPAPTPMEDFMTPFLDPIVCYDNCFNRNLSQFCRDLYVSYLPPALFMLEWKTFFWEV
SGSRVSNLRITVINLLTTSTKELLALGRKTFLVINPYGAFGRGAFDLHYILLFLSMIIMV
GSSINVNVMNYGAFGNGVSYDSQAFTKAWAAACGGRTNSVIYVPGGKKFLVKPMIFQGPC
KATTIAMQIQGSILAPNKKPDWGTSAPLLSFNSVNGLTLAGTGTIDGQGSMWWKNCAQNP
VDSLFRKTRRLHLMNSPSAVVSIDGCTNSIISNIKITNPANSPNTDGIDLGGSTQITILD
SLIQTGDDCIAISSGSHYNISGITCGPGHGISIGSLGIDGSSAAVEEVHVRHSTFQGTQN
GARIKTWQGGKGYARKITFEQITLVDAGNPIIIDQYYCPNQKCQNQTSAVQISGVGFIGL
NGTTSTPDRAIQLSCSRTVPCTNILLEHVHITSKTPTKATCTNSHGRFYDTVPRPNCLLQ
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgataaaggaccccactgcagtactgcctatatatgaggatggtgcttactgcttactg
cttactgcttactgcttactgcttactgcttactgcttagtaggagatttaggggctcat
tgggagtggaggattgacacgcaagcgttcgatctgcactatattttgttatttttgagc
atgataataatggtgggatcaagcataaatgtgaatgttatgaactatggagctgttgga
aatggagttacctatgattctcaagcatttgcgaaggcttgggcagcagcttgtggaagt
agaacaaatagtgtgatatatgtaccagctggaaagaaattcttggtgaagccaatgaca
tttcaaggtccatgcaaggccaccaccattgctatgttcaaggaatcattccccataagc
cttgaccaccttgggatgtcctcaacctacccaccccttggcagccaggagaacattgga
agcttgggatatggtggaagcagtgctgcagtggaagaggtacatgtacacgtacaccat
tctacatttcgagggacacaaaatggcgccagaataaaaacatggcagggagggaaaggg
tatgccagaagaatcacattcgaggacatcacactcatagatgctggaaaccctataatt
attgaccaatattactgttctcaacagaaatgtcgagatcagcttccaggactccgactc
caacaaaagccacctgcacctactcccatggaagattttatgacaccgttcctagaccca
attgtttgttacgataactgttttaatagaaacttgtctcaattttgccgagacttgtat
gtttcctacctgcctccggctctttttatgttggaatggaagacatttttttgggaggta
agcgggagtagggtctcaaacttgagaatcaccgtaatcaatttactaaccacctcaact
aaggagttgttggcattaggtagaaagacattcttggtcattaacccttatggtgcgttt
ggtagaggggcgtttgatctgcactatattttgttatttttgagcatgataataatggtg
ggatcaagcataaatgtgaatgttatgaactatggagcttttggaaatggagtttcctat
gattctcaagcatttacgaaggcttgggcggcagcttgtggaggtagaacaaatagtgtg
atctatgtaccaggtggaaagaaattcttggtgaagccgatgatattccaaggtccatgc
aaggccaccaccattgctatgcaaattcaaggaagcattttggcacccaataaaaaaccc
gactggggtacaagcgcacctttgttgtccttcaacagtgtcaatggacttaccttagct
ggtaccggaaccattgacggccaaggctccatgtggtggaaaaattgcgcccaaaatccc
gtagattctctgttcaggaagacccgacgattacacttgatgaatagcccaagtgctgta
gtatctatagatggctgtacaaattcaataatctcaaatatcaagattacaaaccctgcg
aatagccctaacactgatggcatagacctcggcggttcaacccagattacaattcttgac
agcctaattcaaaccggtgatgactgtattgcaatatcttcagggtcacattacaatatt
tctgggattacatgtggtcctggtcatggaataagcattggaagcttgggaattgatgga
agcagtgccgcagtggaagaggtacatgtacgccattctacatttcaaggaactcaaaat
ggagccagaataaaaacatggcagggagggaaaggatatgccaggaaaattacattcgag
cagattacactcgtagatgctggaaaccccatcatcattgaccaatattactgtcctaat
cagaaatgtcaaaatcagacatcggcagtccaaataagtggtgttgggttcatcggactc
aatgggacaacctcaacacctgaccgggcaatccagctcagttgcagtcgaacagtcccg
tgcaccaacatattacttgaacatgtccacataacttccaagactccgacaaaagccacc
tgcaccaactctcatggaaggttttatgacactgttcctagacccaattgtttgttacaa
taa
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