Tripterygium wilfordii (thunder duke vine): 120012142
Help
Entry
120012142 CDS
T07256
Name
(RefSeq) ABC transporter A family member 1-like isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120012142
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
twl02000
]
120012142
Transporters [BR:
twl02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120012142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_22
AAA_29
nSTAND3
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
120012142
NCBI-ProteinID:
XP_038719357
LinkDB
All DBs
Position
13:complement(4098323..4127162)
Genome browser
AA seq
1894 aa
AA seq
DB search
MGTARRQLKAMLRKNWLLKIRHPFVTLAEILLPTIVMLLLIAVRTRVDTQIHPAQPHIQK
DKFVEVGKGISPNFQQVLELLLAKREYLAFAPDTEETRMMINLMSIKFPLLKQVAKVYED
ELALETYISSDLYGTNNEVKNCSYPKIKGAVVFHGQGPQLFDYSIRLNHTWAFSGFPDVK
SIMDVNGPFVKDWELGVNIVPMLQYSFSGFLTLQQVVDSFIIYAAQQTETNVAIEYIDSP
SSDSFSRSSALKLPWTQYSPENIRIAPFPTREYTDDEFQSIIKSVMGVLYLLGFLYPISR
LISYSVLEKEQKIREGLCMMGLKEGIFHLSWFISYALQFALSSGIITACTMGSLFKYSDK
SVVFVYFFLFGLSAIMLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDEAVPMILKV
VASLLSPTAFALGSINFADYERAHVGLRWSNIWRADSGVNFLVCLLMMLLDTLLYCLIGL
YLDKVLPKENGVSYRWNFIFQNCFWREKNIIKHQTSSVEGKVDDNFSKNKSNFCLRDTVE
PIVEAINLDMKQQELDGRCIKMRNLHKVYATRRGNSCAVNSLQLTLYENQILALLGHNGA
GKSTTISMLVGLLPPTSGDALVFGKNIVTDMDEIRKGLGVCPQNDILFSELTVREHLEIF
AVLKGVEDDVLKSVVIDMVDEVGLADKVNTVVKALSGGMKRKLSLGIALIGNSKVVILDE
PTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFL
KHQYGVGYTLTLVKSSPNASTAADIVYRHVPSATCVSEVGTEISFKLPLGSSASFENMFR
EIESCMRTPIRDAERMGSDDTSHRGIESYGISVTTLEEVFLRVAGCDYYETECASQRNDF
ISSDSVVSSGSYDQAPKKSFYSKMLGDYLKLIAGVVFSTVWRACGLILAAVLSFIKFLTM
QCCSCCIISRSTFWQHCKALFIKRAVSAQRDRKTIVFQLLIPVVFLFIGLLLLKLKPHPD
QPSITFTTSNFNPLLSGGGGGGPIPFNLSCPIAKEVADYIEGGWIQNFKQGGYRFPNSKG
ALADAIEAAGPTLGPDLLSMSEFLMSSFNESYQSRYGAIVMDDQNVDGSLGYTVLHNSSC
QHSAPTYINVMNAAILRLAAHNRNMTIRTRNHPLPMTESQRLQRHDVDAFSAAVVVNIAF
SFIPASFAVALVKEREVKAKHQQLISGVSVFSYWASTYAWDFISFLFPTSFAVLLFKIFG
LDQFVGSDCFWPTILLFLEYGLAIASSTYCLTFFFSDHTVAQNVVLLVHFFAGLVLMIIS
FIMGLIETTARANDVLKNFFRLSPGFCFADGLASLALLRQGMKDKSSNEVFDWNATGASI
CYLALESIGFFLLTLVLELLPSHKLALFSLKEWCSNILNLLRDTSSDAEPLLRSSSENSS
LDLDEDIDVRNERNRVLSGSIDNAVIYLRNLRKVYPEGNNTGAKVAVDSLTFSVQAGECF
GFLGTNGAGKTTTLSMLSGEESPSDGSAFIFGKDIRSSPRAVRKHIGYCPQFDALLEFLT
VQEHLELYARVKGVPGYRLESVVKEKLEEFDLSKHAKKPSYTLSGGNKRKLSVAIAMIGD
PPIVILDEPSTGMDPIGKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG
HLRCIGSPQHLKTRFGNHLELEVKPTEVGSVDLENLCRIIQERLFHFPSHPRSLLDDLEV
CIGGIDSITSEGASAAEISLSREMIMIIGRWLGNEERVKRLLSPSHISDGFLFEQLTEQL
FRDGGIPLPIFAEWWLSKEKFFVIDSFIVSSFPGTTFQGCNGLSVKYQLPYREGFSLADV
FGHLERNRSQLGIAEYSISQSTLETIFNHFAANP
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atggggactgcgcggagacagttgaaagctatgcttcggaagaactggcttctcaaaatt
cgtcatccttttgttactctcgccgagattttgcttcctacaattgtaatgttgttgttg
atagctgttaggacacgagttgatacgcaaattcacccagctcaaccgcatatacaaaaa
gataagtttgtggaagtgggcaaaggcatatctcccaatttccaacaagttttagaatta
ttgttggccaagagagagtatttggcatttgctcctgatacagaagaaacaaggatgatg
atcaatttgatgtctataaaatttcctttactgaagcaagttgctaaggtctatgaagat
gaacttgcgcttgaaacctacatctcgtcggatctctatggtactaataatgaagtcaag
aattgttcatatccaaaaattaaaggagcagtagtatttcatggccaaggtcctcagtta
tttgattatagcattcgcctcaaccacacttgggctttttctggatttcctgatgttaag
tcaatcatggacgtaaatgggccttttgtcaaagactgggaattgggtgtcaatattgta
ccaatgttgcagtacagcttcagtggatttttgactcttcagcaggttgtggattcattc
ataatatatgctgctcagcaaactgaaactaatgttgctattgaatacatagacagccct
tcatcagattcattcagcagatcatctgccctcaagcttccatggacacaatatagccca
gaaaatatcagaatagctcctttccctactcgtgaatatactgatgacgagtttcagtcc
atcattaaaagtgtcatgggagtattgtatctcttaggatttctctacccgatatctcgc
ctaataagctattcagtgcttgagaaggagcagaagataagagaaggtctttgcatgatg
ggcttgaaagaggggatatttcatctttcttggtttatttcctatgctttgcagtttgca
ttatcatctggtatcatcacagcttgtaccatgggtagccttttcaagtatagtgataag
tcggtggtgttcgtgtatttctttttgtttggactcagcgcaatcatgctgtcatttctg
atatctacgttcttcacacgagcaaaaacagcagttgcagttggaaccctttcttttctt
ggagccttctttccttattacactgtcaacgacgaagctgtccccatgatattaaaggtt
gttgcttctttgctttcaccaacggcatttgctctaggatcgattaactttgccgattat
gagcgtgctcatgttggacttcgttggagcaacatatggcgggctgattctggtgtaaat
tttttggtctgtctcctgatgatgttgcttgacacactattgtactgtctcattggtctc
tacctagataaggtccttcccaaggaaaatggagtaagctatcgctggaacttcatattc
caaaattgcttctggagggaaaaaaatatcatcaaacatcaaacttcttctgtggagggt
aaagtcgatgataatttttcgaagaacaagtcgaatttttgtttgagagatactgttgaa
cctattgtagaagcaattaatttggacatgaagcaacaagagcttgatggcagatgtata
aagatgaggaacctgcataaagtgtacgctaccagaagaggaaatagttgtgctgttaac
tctttacagctgaccttgtatgaaaaccagattcttgctcttctaggacacaatggagct
ggtaaaagtacaacaatttcaatgcttgtgggccttcttcctcctacatcgggggatgct
ctggtgtttggcaagaacattgttacagatatggatgaaatacggaagggacttggtgtt
tgccctcaaaatgatatccttttttcggaattgacggtgagagaacatttggagattttt
gctgtgttgaaaggtgtggaggatgatgttctcaagagcgttgtgattgatatggttgat
gaggttggtttggctgataaagtgaacactgttgtgaaggctctttctggcggcatgaaa
aggaaattgtctcttgggattgcacttatcggaaatagtaaagttgtaattcttgatgaa
cctacaagtggaatggatccatactcgatgcgcttgacatggcagctaataaaaaagatt
aaaaagggaaggatcatattactaacaacacactcgatggatgaagcagatgaacttgga
gatcggatagctatcatggctaatggctctttgaaatgctgtggaagttcacttttcttg
aagcatcagtatggggttggttatactcttactttagtcaagtcttcacctaatgcctct
actgctgccgacatcgtttaccgtcacgttccatcagcaacgtgtgtaagtgaggttgga
actgagatttcgttcaagcttcctctaggatcgtcagcatcttttgaaaacatgtttaga
gaaattgaaagttgcatgagaacacctattcgtgacgcagaaagaatgggtagtgatgat
acaagtcatcgtggcattgaaagttacggtatatctgtcacaacgctggaggaagtattt
ctgagagttgcaggatgtgactactacgaaactgaatgtgccagtcagagaaatgatttt
atttcttctgattcagtggtttcttcaggttcatatgatcaagcacccaaaaaaagtttt
tattcaaagatgttgggagattatttaaagctcatcgccggtgttgtattttccacagta
tggagagcctgcggcttgattttggctgcagttttaagttttattaagtttctaactatg
cagtgctgtagctgttgtatcatttcaaggtcaacgttttggcaacactgcaaagcatta
tttattaagagggcagtatctgctcagagagaccgcaaaacaatcgttttccagcttctg
atacctgttgtcttcttgtttattggacttcttcttctcaagcttaagccacatcccgat
cagccgtctatcaccttcacaacttcaaatttcaatcctctattaagcggcggcggcggc
ggcggtcccattcctttcaatctttcctgtcccattgccaaagaggttgcagactatata
gaaggaggttggattcaaaactttaaacagggtggatatagattccctaattcaaaaggc
gcattagctgatgcaatcgaagcagcagggccaaccttggggccagatttactttcaatg
agtgaattcttaatgtctagctttaatgaatcctaccagtcgaggtatggggcaattgtt
atggatgatcagaatgttgatggaagtttaggatacaccgtactgcataacagctcttgc
cagcactctgctccaacctatatcaatgtaatgaatgctgcaattcttagattggcagct
cataatagaaatatgacaattcgaacacgcaaccatcctctgccaatgacagaaagccag
cgcttgcaacgtcatgatgttgatgcattttctgctgcagttgttgttaatattgccttc
tccttcattcctgcttcatttgctgttgcccttgtaaaggaacgtgaagtaaaggctaag
caccaacaactaattagtggagtttctgtattctcatattgggcatcaacatacgcatgg
gatttcatcagcttccttttccctacatcttttgctgtacttcttttcaaaatttttggt
ttggatcagtttgttggaagtgattgtttctggccaacgattctattgtttttggagtat
ggactggcaattgcatcatcaacatattgccttacattcttcttttctgaccacacagta
gctcagaatgtggttcttttggtccactttttcgctggacttgttcttatgattatatca
ttcatcatgggccttatagagacaacagcaagggcaaatgatgtcctcaagaatttcttc
agattatcaccggggttttgctttgctgatggacttgcttcactggctcttttacggcaa
ggaatgaaagataaatccagtaatgaggtttttgactggaatgctacaggggcttcaatt
tgttaccttgcccttgagagcatcggtttcttcctcttaacacttgtgcttgagctcttg
ccttctcacaaattagctctgttctcacttaaggagtggtgtagtaatattttgaacctg
cttcgtgacacttctagtgacgcagaaccccttttaagatcttcgtccgaaaattcttct
cttgatcttgatgaagacatagatgttcggaatgaaagaaacagagttctttcgggttcc
attgataatgctgtcatctatttgcgcaatcttcgtaaggtttatcctgaaggaaataac
actggggcaaaagttgctgtggattcgttgaccttctcagttcaagcaggagaatgtttt
ggctttttaggaacaaatggtgctggaaagacaaccactctatctatgttgtcgggtgaa
gaatcaccaagtgatggaagtgcattcatttttggcaaggatattaggtcaagtcccagg
gcggttcgaaagcatattggttattgcccccaattcgatgctctgttggagtttttaact
gtccaggagcatcttgagctttacgctagagtcaaaggagttccaggttacaggctagag
agtgttgttaaggagaagttagaggagtttgacttgtcgaagcatgctaaaaagccatca
tatacactaagtgggggaaacaagcggaagttgtctgttgcaattgcaatgattggtgat
cctcctatagtcattcttgatgagccatcaactggtatggatcctattggaaaacgattc
atgtgggaagtgatttcccgtttgtcaactagacaaggaaagacagcagttattctaaca
acacacagcatgaacgaagctcaggcattgtgcacacgaattggaataatggttggaggc
catttaagatgcatcggaagtcctcagcatttaaaaacacggtttggaaatcatcttgag
ttagaggtaaaacctactgaagttggctctgtagatctcgaaaacctatgccgaatcatt
caagaaaggctttttcactttccctctcatccaagaagcttgctcgatgatcttgaagtt
tgcattgggggaattgattccattacttctgagggtgcatcagcagcagagatcagtttg
tctcgagaaatgatcatgattattggtcgctggcttggcaatgaagaaagagtaaaaaga
cttctatctccaagtcacatatccgatggatttctgtttgaacagttaacagaacagttg
tttcgagatggtgggatacctttgccaatatttgcagaatggtggttatccaaagagaaa
ttttttgttattgattcctttattgtatcttcatttcccggcacaacattccaagggtgc
aatgggttgagtgtcaaataccagttgccctacagagaaggcttctcacttgcagatgtc
tttggacaccttgagcgaaacaggagtcaactgggaatagcagaatacagtatcagccag
tcaaccctggaaaccatatttaaccattttgcggccaatccttga
DBGET
integrated database retrieval system
