Tripterygium wilfordii (thunder duke vine): 120013094
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Entry
120013094 CDS
T07256
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03440
Homologous recombination
twl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120013094
03450 Non-homologous end-joining
120013094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
twl03032
]
120013094
03400 DNA repair and recombination proteins [BR:
twl03400
]
120013094
DNA replication proteins [BR:
twl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
120013094
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
120013094
BRCA1-C complex
120013094
NHEJ (non-homologous end-joining)
MRX complex
120013094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
Rad50_zn_hook
SbcC_Walker_B
AAA_21
AAA_29
CCDC92
AAA_27
ABC_tran
Rol_Rep_N
AAA_16
DUF7257
AAA_22
Motif
Other DBs
NCBI-GeneID:
120013094
NCBI-ProteinID:
XP_038720675
LinkDB
All DBs
Position
13:complement(14908761..14931629)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAVGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHSGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKGESLKI
QMQELENCIQIADGNIHHTEATLKDLRKLQDQISTKTAERSTLFKEQQKQYAALAEENED
TDEELKEWKTKFEERIAILETRISKLEREVNDTETKSSFLKQSINEYIWEIGKLQTEAEA
HMSLKNERDSTIQKLFGRHNLGSLPSIPFSDEVAMNLTNRIKSRLMDLEKDLQDKKKSDE
IELKTAWDRYMDANDRWKNVDAQKQAKLDIKSGIIKRIEVKENERDSLELQISNVNLSQI
DEKEKNLRIDVERKTYQLAEREFESTIRQKQSELFGIEQQIKTLNRERDIMAGDSEDRVK
LSLKKAEFENHKKRHKKILEEYKDKIRGVLKGRLPPDKDLKKEITQALRALGLEYDDLNS
KSREAEKEVNVLQMKIQEVNNNLSKLRKDMDSRKRLVESKLQSLDQQSFAIDSFVHVLEL
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAAS
SAEHMKVLAVDSSSADSYFQQLDKLRMLYEEYLKIGRETIPPAEKNLHELTEELDQKSQA
LDDVLGVLAQVKADKDSVEALVQPVETADRIFQEIQTLQQQIDDLEYKLDFRGQGVRSME
EILSELSRLQSTKDGLHNELEKLRDEQRYMENDLSNIQIRWHSSREEKVTATNTLRDFKK
AEEELERLVEEKIQVDLDEKHLADALGPSSKEKEKLLSDYNVLKVKLNNEYEEQAEQKRN
YQQEIETLLRIASKIKEYYDLKKGERLMELQEKRSLSESQLQRCDTRKEEILAELNKSKD
LMRNQDLLRRNIEDNLNYRKTKADVDELAQEIESLEEQILKIGGVSTCEAELVKLSKERE
RLLSELNRFRGTISVYESNISKNKIDLKQAQYKDIYKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTLKMEEINKIIRELWQQTYRGQDIDYICIHSDSEGAGSRSYSYRVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLATALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVSKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgtcgataagatgcttattaagggcatccggagtttcgacccggaaaacaag
cacgtcatcaccttcttcaagcccttaaccctaatcgtcggccccaacggtgccggaaaa
acgacgattatcgagtgcttgaagctgtcttgcactggagagttgcctccaaatgcgcgg
tctgggcatagttttattcatgatcccaaggttgcaggggagactgagacaaaggggcaa
atcaagctgcgattcaagacggctgtgggtaaggatgtggtatgtatcagatctttccag
ttgacacaaaaggcatcaaagatggagtacaaggctatcgagagcgtgcttcaaacgata
aatcctcactccggagagaaagtctgccttagttatagatgcgctgatatggaccgagaa
atccctgctctaatgggtgtgtcaaaggctgttctggaaaatgttatatttgtccaccaa
gatgaagctaactggccattgcaagatccttcaacgttgaaaaaaaagtttgacgatatt
ttctctgccacacgatacacgaaagccttggaggttattaaaaaactacacaaggaacaa
gcacaagagataaagacatacaagctgaaattggagaatcttcaaaccttgaaggatgct
gcatataagcttcgggaaagcattgctcaggatcaagaaaaaggagaatctttgaaaatt
caaatgcaggagttagaaaattgcatccaaattgcagatggtaatattcatcatactgaa
gcaactctgaaagatttgcgaaaactacaagaccagatatcaactaagactgctgaaagg
agcactttgtttaaggagcagcagaaacaatatgctgcccttgctgaggaaaatgaagat
actgatgaagagttgaaggaatggaaaaccaagtttgaagaaaggattgcaattttggaa
actagaatcagcaagctggagagggaagtgaatgacactgagactaaaagttcttttttg
aagcagtcaattaatgaatatatttgggagatcggcaagcttcagacagaagctgaagct
cacatgtccttgaagaacgaaagagattccaccattcaaaaactttttggaagacataat
ttagggtctttaccttctattcccttcagtgatgaagttgctatgaacctcactaatcga
ataaaatcaaggctgatggatctcgagaaggatttacaagataagaagaaatccgatgaa
attgaactcaagacagcatgggatcgctacatggatgcaaatgaccgttggaaaaatgtg
gatgctcagaaacaggctaaactagatataaagagtggcattatcaaacgcattgaagtg
aaggaaaatgaacgggattcacttgaacttcaaatttctaatgttaatctttcacaaatt
gatgaaaaagaaaagaacctgcgaatcgatgttgagagaaagacctaccagctggccgag
agagaatttgagtcgaccatacgacaaaagcagagtgagctattcggcatcgagcaacaa
attaagactcttaatcgggaaagagacattatggctggtgattctgaggacagagtgaaa
ttatctttgaagaaggcagagtttgaaaaccacaagaagaggcataaaaagatacttgag
gaatacaaggataagattagaggcgtgctaaaagggaggcttccccctgacaaggatttg
aagaaggaaataactcaagcattaagggctcttggattggagtatgatgacctgaactca
aaatctcgtgaagccgagaaggaggtgaatgtgttgcagatgaaaatacaagaagttaat
aacaacctgtccaaactccggaaggacatggactcgcggaagagattagttgaatctaaa
ctccaatccttagatcagcaatcttttgccattgattcttttgtccatgttttggagttg
gcgaaggagaaaagagatgtccagaaaagcaagtacaacattgctgacggcatgcggcag
atgtttgatccttttgaaagagttgctcgtgctcaccatgtttgcccatgctgtgagcgt
cccttctctgctgaagaggaagatgaatttgttaaaaagcaacgagtgaaggcagctagc
tctgcagagcacatgaaagttttggctgttgattcctcaagtgctgactcttatttccag
cagttggataaactacgcatgctttatgaagaatatctaaaaattggcagggaaacaatc
ccacctgcagaaaaaaatttgcatgagctcactgaggagcttgatcaaaaatctcaagcc
cttgatgatgtgttgggtgttttagctcaagtaaaggctgacaaggactcagttgaggcc
ttggtgcaacctgttgagactgctgacagaattttccaagaaattcaaactttgcaacag
caaattgacgatttggagtataagcttgattttcgagggcaaggtgtgagatctatggag
gaaattctgtctgagctaagtagactacagagcacaaaggatgggttgcataatgaactg
gagaagttaagggatgaacaacgatacatggaaaatgacttatcaaatatccaaatacga
tggcacagttcgagggaggagaaagtaacagcaactaatacattacgtgattttaaaaag
gctgaagaagagttggagcgcttggttgaggaaaaaattcaagttgatctggatgagaag
catttggcagatgctcttggcccctcgagcaaggagaaagaaaaactactgagtgactac
aatgtcttgaaagttaaactgaataatgagtatgaggagcaggcagaacaaaaaagaaat
taccaacaggaaattgagacgctcctcagaattgcttctaaaataaaagaatattatgat
ttgaagaaaggagaaagattgatggaactacaagaaaagagatctctatctgaatcccaa
cttcaaagatgtgatactagaaaggaggaaattttagctgaactaaacaaaagtaaagac
ttgatgcggaatcaagacttgctgagaagaaatatcgaggacaacttgaattataggaaa
acaaaggctgatgttgatgaacttgcccaggagattgaatcactggaagaacaaatactg
aaaattggtggggtctccacatgtgaagctgaacttgtaaaattgtcaaaagaaagagag
agacttctctctgagttaaacaggtttcgcggaactatatctgtttatgagagcaacatt
tcaaaaaataaaattgatctcaagcaggcacaatacaaagacatttacaagcgatacttt
gatcagttaatccagcttaagacaactgagatggcaaacaaggacctggacagatactac
aatgcccttgacaaagcattgatgcgcttccacactttgaagatggaagaaataaataaa
attataagggaattgtggcaacaaacgtaccgaggacaggatatagattatatatgtatt
cattcggattcagaaggtgctgggagccgttcctacagctacagggttctcatgcagact
ggtgatgcagagctagaaatgagaggaaggtgcagcgctggtcaaaaggtccttgcttcc
ctaattattcggttggcattagccgagacattttgcctgaattgtggaatactagcttta
gatgaaccaaccactaacttggatggcccaaatgctgagagtcttgcgacggcactcctt
agaatcatggaagatagaaagggacaggagaattttcagcttatagtaattactcatgat
gaacgttttgctcagctaattggacagcggcagcatgcggaaagatattatagagtttca
aaagatgaccatcagcacagtattattgaagctcaggagatatttgattga
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integrated database retrieval system
