Tripterygium wilfordii (thunder duke vine): 120013310
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Entry
120013310 CDS
T07256
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120013310
03036 Chromosome and associated proteins [BR:
twl03036
]
120013310
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
120013310
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120013310
Chromosome and associated proteins [BR:
twl03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
120013310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
AAA_22
UvrD-helicase
PhoH
Mov-10_helical
Helicase_RecD
ATPase_2
UvrD_C
SLFN-g3_helicase
AAA_16
AAA
DEAD
SNF2-rel_dom
AAA_24
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
120013310
NCBI-ProteinID:
XP_038721003
LinkDB
All DBs
Position
13:complement(16049717..16055163)
Genome browser
AA seq
894 aa
AA seq
DB search
MGTRGGKWADEEYSVIGDEAEVPVIDYEDDKSVCSYNPIEEGPVIISVPFPFVDGKPQSI
IVGETAVDSITITNSTEDAVDLWTQIYASNPEDSFTLSIMKPPSPGSDVNSVRGFLEAFK
LEDRMVQQGETQTLWLSCKPKAIGLHTSIVHLDVGNDRIERVVFLLAEDKISQSLASQKP
FSFSKGRRNKHFVVNNFVGGSRPTRPTDRSFKNRLPRYDIPMEIREMIENKQIPDVICGG
LTFDTYASYFKNLLVVEELQMEEDMRSHNMESVAMRKKGPFLTLEVPGLAEKRPSLVHGD
FIFAKLASDVDDIPPYQGYIHRVEADEVYLKFAPEFHQHHAGINLYNVQFTYNRINTRRL
YQAVDAAQGLATEFLFPSDTSERRLIQESPLVPISCTLNEEQMHSTAMILGCRGAPPYVI
YGPPGTGKTMTLVEAILQLYKSRKNSRILVCAPSNSAGDHLLDKILSEKAVDLREEDIFR
LNASSRPYEDVKPDHIRFCFFDEFVFKCPPLRALTCYRIIISTYMSASLLHAEGVERGHF
SHIFLDEAGQASEPESMISIGNFCRRKTVVVLAGDPMQLGPVVFSRHAETYGLGKSYLER
LFECEPYSSEDENYITKLVRNYRSHPTILDLPSKLFYQGHLMACKDDTSSFMTSVNFLPN
KEFPVLFFGIQGCDEREGNNPSWFNRFEASKVVEIIKKLTMSSDVSEDSIGVITPYRQQV
LKLKKALDNLDMPGIKVGSVEQFQGQEREVIIISTVRSTIKHNEFDKTHCLGFLSNSRRF
NVAITRAISLLVIIGNPHIICKDQYWNQLLWYCTDNNSYEGCKLPEREEYGGSDYVEDSS
LNYYEGGKTQPAEEAEWGQDSYEIPKPVTDEWGQEFSEIPKPVTDEAEWSDGWK
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgggaacacggggtggtaagtgggccgatgaagagtactctgtcattggagatgaagct
gaagttccggtcattgactatgaggatgacaaatctgtgtgtagttataatccgattgag
gaaggcccagtcataatttctgtcccattcccttttgtggatggaaagcctcaatcaatt
attgtgggggaaactgctgtggattcaatcaccatcacaaactccactgaagatgccgtg
gacctttggactcaaatttatgcttcaaatcctgaggattcgttcacactttctataatg
aaaccaccatcaccgggttctgatgtaaacagtgtccgaggctttctggaggcttttaag
ttagaggatagaatggttcagcagggagagactcaaacactatggctttcttgcaaacca
aaggcaattggcttgcacacttcaattgtgcatttggatgtgggaaatgataggatagag
cgagtggtctttctcttggctgaagataaaatatcccaatccttggcatcacagaagcct
ttttctttttcaaaaggcaggcgaaataaacattttgttgttaataactttgtggggggt
tctcgtcccacaaggccgacagaccgaagtttcaagaatcggcttccacggtatgatatt
ccaatggaaattcgagaaatgatagagaacaagcagatccctgatgtcatctgtggaggt
ctaacatttgacacttatgcttcttactttaaaaatctactggttgtggaagaattacag
atggaggaagatatgcgaagtcacaacatggagtctgttgctatgaggaagaagggacct
tttctcacccttgaggtccctgggttggctgagaaaaggccctcccttgtccatggggat
tttatttttgccaagcttgcttctgatgtagatgacattcctccatatcagggctacatc
catcgtgtcgaggccgatgaagtgtatttgaaatttgctccggaatttcaccaacatcat
gcaggcatcaacctttacaatgtacagttcacatataatcggatcaatacaaggaggctt
tatcaggctgttgatgcggctcaggggttagcaacagaatttctatttccatctgacaca
tctgaaaggaggctgattcaggaatctcctctggtacccatttcttgtactcttaatgag
gagcagatgcattccactgctatgattcttgggtgcaggggagctccaccttatgtgata
tatgggcctccaggtacaggaaagactatgacacttgtggaagccatacttcaactctac
aaatctcgaaagaattcacgtattctagtatgtgcgccttccaacagcgcaggggaccat
ttgctggacaaaattctttcagaaaaggctgttgatcttcgtgaagaagacatatttagg
cttaacgcctcttctcgtccatatgaggatgtcaagccggatcatatccgattttgcttc
tttgatgagtttgtcttcaaatgtcctccacttcgtgctctcacatgctatcgaatcatt
atatctacttacatgagtgcatctcttcttcatgcggaaggtgttgaaagaggccacttc
tctcatattttcttagacgaggctggccaagcttcagaaccagaaagcatgatctctatc
ggcaacttctgccgaaggaagacagttgttgttcttgctggagaccccatgcagttaggc
ccagtagtattttccagacatgcagagacatatggattgggaaagtcttacttggagagg
ctgtttgagtgtgaaccttatagcagcgaagatgaaaattacataacaaaactggtccga
aattaccgatctcacccaacaattttggatctcccttcgaagctgttctatcaagggcat
ttgatggcatgcaaagatgatacaagttcattcatgacttcggtgaactttctgccaaac
aaggagttccctgttcttttctttggcatccaaggctgtgatgaaagggagggaaataat
ccatcatggtttaatcgatttgaagcaagcaaggtagtggaaattatcaagaagctgacc
atgagcagtgatgtaagtgaggacagtattggggtcattacaccttatcggcagcaagta
cttaaactgaagaaagcccttgacaatttggatatgcctggtatcaaggttggaagtgtt
gaacaatttcaaggacaagaaagggaagttattattatatctactgttcgttccacaata
aaacacaatgagtttgacaaaacccactgcttgggatttttgagcaattcaagaaggttc
aatgtggctattacccgtgccatatcgctgcttgttattattgggaatccacacataatc
tgcaaggaccaatactggaatcagcttctttggtattgtaccgacaacaactcttacgaa
ggttgtaagctccccgaaagagaggagtatggcggcagtgattacgtggaagacagttcc
ttgaactactacgaagggggaaaaactcagcccgctgaagaagctgaatggggccaagat
tcctatgagatccccaagcctgttacagatgaatggggccaagagttctctgagatcccc
aagcctgttacagatgaagctgaatggtctgacgggtggaagtag
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