Tripterygium wilfordii (thunder duke vine): 120014920
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Entry
120014920 CDS
T07256
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120014920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120014920
03012 Translation factors [BR:
twl03012
]
120014920
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120014920
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120014920
Translation factors [BR:
twl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120014920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
Viral_helicase1
AAA_14
Androgen_recep
Motif
Other DBs
NCBI-GeneID:
120014920
NCBI-ProteinID:
XP_038722977
LinkDB
All DBs
Position
2:complement(10624233..10633787)
Genome browser
AA seq
1214 aa
AA seq
DB search
MLPSLLFPSLPPPQAPSPTAFRLTTYPETLKPSLFSCRLLSMKDRSPSYGSVYVPPHHRL
RSFVTAPNYSSHANPSPESKEGAALKPGETLPDWQSQQQKQQQLKQQHQPQQWSNYSRDT
SILRDGASEDGSDWEFDSTLPPGVSPSVNTEEWKQKLDILLRDKDKHELVSREKKDRRHF
DQIAALASRMGLYSHLYAKVVVFSKVPLPNYRFDLDDKRPQREVSLHASLLRRVDAYLSE
HISQKSSTNKTFPDISFTRSSSMGSFANDDWLFEQPELPVSSNAVKEKKFWRRSLQLRNQ
QQTWQESPEGRKMLEFRASLPAFKEKGAILEAISRDQVVIISGVTGCGKTTQIPQFILES
EIESVRGAVCSIICTQPRRISAMSVSERVSSERGEKLGESVGYKVRLEGMKGRDTHLLFC
TTGILLRRLLVDRNLKGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLD
AEIFSSYFGGALVINIPGFAYPVRTHFLEDILEMTTYRLTSSNQIDDYGQEKMWKINKQT
VRKRKSQIASVVEDALRAADLKEYSLQTQESLSFWNPDCIGFNLIEHILCYICEKERPGA
VLVFMTGWDDISSLKEKLQSHPILGDPSQVLLLACHGSMASSEQRLIFEEPEVGVRKIVL
ATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKASALQRRGRSGRVQAG
ECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQN
AIEYLKVIGALDNDENLTVLGRYLTMLPVEPKLGKMLVLGSILDCLDPILTVVAGLSARD
PFLTPFDKKDLAEAAKSQFSHDYSDHFALIRAYEGWKEAEGDLNGFDFCWKNFLSAQSMR
AIDSLRKEFFSLLKDTGLIDSNATICNAWSHDDHMIRAIICYGLYPGICSVMNNEKSFLL
KTMEDGQVLLYSNSVNARETRIPYPWLVFNEKIKVKSVFLRDSTAVSDSVLLLFGGSISS
GDIDGHLKMLGGHLEFFMQPAVATMYRSLRRELDELIQNKLLNPRMDIHGHHEILSAVRL
LVSEDQCDGRFVFGRQVLNSPKTYVMETQPTLVSRSESGPGGDNSKSQLQTLLTRAGYAA
PSYKTKQLKNNQFRAIVEFNGMQIMGNPCSTKKNAEKDAAAEALHWLMGGMQTGDDEYIN
HMSVLLKKSKNNHN
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgctcccttctctcctctttccatcactgccgccgccgcaggcgccatcaccaacagca
tttcgtctcactacgtacccggaaactctaaaaccctcgctattttcttgtcggttgctg
tcaatgaaggatcggtctccttcatacggttctgtttacgtgcctccgcatcatcgcctc
cgttcctttgtcaccgcacccaattactcctctcatgcaaatccttcacccgaatccaaa
gaaggcgcggctctaaagcctggagaaactctgcctgactggcaatcccagcagcaaaaa
caacaacaactgaagcaacagcaccagccgcagcagtggagtaattattcgcgggatact
tctattttacgtgatggagcatctgaggacggctctgattgggaattcgactcaactttg
ccaccgggggtttctccttctgtgaatacggaggagtggaaacagaagctagacatactt
ctgcgtgacaaggacaaacatgaattggtctccagggagaaaaaggatagacgccatttt
gatcaaattgcagctttggccagcagaatgggtttgtacagccatctgtatgcgaaagtt
gttgtctttagtaaggtcccattgccaaactatagatttgatctggatgacaaacgtccg
cagagggaggttagcttgcatgccagtttgctgagacgggttgacgcatatttgagtgaa
cacatttctcaaaaatcaagcacaaacaaaacttttccagatatttcctttacaagatca
agtagtatgggtagttttgctaatgatgactggctgtttgaacagccagagctaccagtg
tccagtaacgctgtcaaggagaaaaaattttggcggagaagtttacaactccgcaatcag
caacaaacttggcaggaatcaccagaaggtcgaaaaatgttggaatttcgtgcaagtctt
cctgcttttaaggagaagggtgccatacttgaagccatctcgcgagatcaggtagttatt
atctcgggtgtaactgggtgtggtaagaccacacaaattccccagtttatcttggaatct
gagatagaatctgttcggggagctgtttgtagcattatatgtacacaaccaagacgaata
tctgctatgtctgtttctgaaagagtgtcttcagagagaggagagaaattgggtgaatct
gttggatataaagtacggttggagggtatgaaaggaagagatacacaccttctcttttgc
accacaggcattttgttgagaagattgctggttgatagaaatttgaaaggtgtgactcat
gttgttgtcgatgagattcatgagcgtggaatgaatgaagatttcctgcttattgtgctc
aaagatctccttcctcgtcggccagacctgaggttgattttgatgagtgcaacccttgat
gcagaaattttctcttcctactttggtggggctctggtcattaatattccgggttttgct
tacccagtccgcactcattttctggaggatattctggagatgacaacttataggttgacc
tcatccaaccaaattgacgattatgggcaggagaagatgtggaaaattaacaagcaaaca
gtaagaaagaggaaaagtcaaattgcttctgtggtcgaggatgcacttcgagcggcagat
ctgaaggaatatagtctccaaactcaggaatctttgtccttttggaaccctgattgtatt
ggttttaatctaatagaacatatactgtgctatatatgtgagaaagaaagacctggtgcc
gttttagtttttatgactggatgggatgacattagttctctgaaggaaaagcttcaatct
catccaatattgggagatcctagtcaggttctgctacttgcatgccatggctccatggcc
agttcagagcagaggttaatatttgaggagccagaagtcggagtgaggaaaatagttctg
gctacaaatattgcggagacaagtatcacaatcaatgatgttgtttttgttcttgattgt
ggaaaggcaaaagagacatcctatgatgccctgaataatactccctgcctgcttccttca
tggatatcaaaggcttcagctctacaaagaagaggaagatctggccgtgttcaagcagga
gaatgttatcatctctatcctagatgcgtatatgatgcttttgcggagtatcaacttcca
gaaattttgaggacgcctctgcagtccctttgcctgcagatcaaaagcttgaagcttgga
agtatttctgagttcttatctagggctttgcaatcaccagaattactagcggttcaaaat
gcaattgagtatttgaaagtcattggagcattggacaatgatgaaaatcttaccgtttta
ggtcgttatttaactatgcttccggtggaacccaaacttgggaagatgctcgtattaggt
tctattcttgattgcctggatccaatattaactgttgttgctggtcttagcgctagggat
cctttcttaacgccatttgacaagaaggatcttgcagaggctgcaaaatctcagttttcc
catgattacagtgaccactttgctcttatccgggcttatgaaggctggaaagaagctgag
ggagatcttaatggatttgatttctgttggaaaaattttctttctgcacaatcaatgaga
gcaattgattcactgaggaaggagttcttctctttgctcaaggatacaggattgattgac
agcaacgcaaccatctgcaatgcgtggagccatgatgatcatatgatacgtgctatcata
tgctatggattgtaccctggaatttgttctgtcatgaacaatgaaaaatcttttttgctc
aaaactatggaagacggccaggtacttctttactcgaactcagtcaatgctcgagaaacg
agaattccgtatccatggctagttttcaatgaaaagatcaaagtgaagtctgttttttta
cgggattctacagctgtgtctgactcagtgctcctgctatttggtggtagcatatccagt
ggagacatcgatgggcacttaaaaatgttaggtggccatttagaatttttcatgcagcct
gccgtagcaacaatgtatagaagcttgaggagagaacttgatgagctaattcagaacaaa
ttattgaatcccaggatggacatacacggccatcacgagatcctatctgcagtgcgattg
cttgtctcagaggatcaatgtgatggaaggtttgtatttggccgccaggttcttaactct
ccaaagacatatgttatggaaacgcagccaaccttggtctcaaggagtgaaagtggacct
ggtggtgataattctaagagccagcttcagacattgcttactagagcaggatatgctgcg
ccctcctacaaaacaaaacaattgaagaacaaccaatttcgagccattgtggagttcaat
ggaatgcaaattatggggaacccttgcagcaccaagaaaaatgcagaaaaagatgctgca
gctgaggcattacactggctgatgggcgggatgcagacaggggatgatgaatacatcaat
cacatgtcagtgttgctgaagaaaagcaagaataatcataactag
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integrated database retrieval system
