Tripterygium wilfordii (thunder duke vine): 120015604
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Entry
120015604 CDS
T07256
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120015604
09123 Folding, sorting and degradation
03018 RNA degradation
120015604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120015604
03041 Spliceosome [BR:
twl03041
]
120015604
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120015604
mRNA degradation factors
5'-3' decay
Lsm complex
120015604
Spliceosome [BR:
twl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120015604
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Por_Secre_tail
DUF8438
Motif
Other DBs
NCBI-GeneID:
120015604
NCBI-ProteinID:
XP_038724024
LinkDB
All DBs
Position
14:complement(10179446..10183761)
Genome browser
AA seq
118 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYFSFKHSS
ILILNYYNYNGLCSINNNGLYSINCSEYSKGYYSLHYSRGSTFSCKSVKLFPTKCSYL
NT seq
357 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaatccatcacagcttctcccatcagagctgatagatcggtgcataggatcc
aaaatatgggtcataatgaaaggagacaaggaacttgttggcactctcaggggctttgac
gtctatgttaacatggttcttgaagatgtcactgaatatttctccttcaaacacagttcc
attctcattctcaactattacaactacaacggtttgtgttctatcaacaacaacggtttg
tattccatcaactgttccgaatactcgaagggttactatagcttacattattccagaggg
tcaacattttcctgcaaaagtgtcaaacttttcccaaccaaatgcagttatttgtaa
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