Tripterygium wilfordii (thunder duke vine): 120016040
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Entry
120016040 CDS
T07256
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
120016040
Transcription machinery [BR:
twl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
120016040
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_36
Motif
Other DBs
NCBI-GeneID:
120016040
NCBI-ProteinID:
XP_038724540
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Position
15:5386479..5390777
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AA seq
510 aa
AA seq
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MMATAAVIGLTAGKRLLNSSSYYSDITERLSYVGDHGFTHCQSCSTKNVIVAKRDLNYSP
SFPALDQNIQTIKALKEHVDTAAVPSAEEMWYQRSNEFEDEISDFDSSLEALLLLQKSML
EKQWNLSFESAAIAESPREKTHKKIPITCSGISARQRRINFRRKTSNQNKSLVQPNGRMQ
LKSSISPELIPNRSKGGYVKGAISEQLLPHAEVVRLSEIIRIGLSLEERKSRLKERLGTD
PTDEQLATSLRISRSELQSKLMECSLAREKLAMSNVRLVLSIAQRYENMGAEMGDLVQGG
LIGLLRGIEKFESSKGFKISTYVYWWIRQGVSRALIDNSKTLRLPTHLHERLGLIRNAKI
KLQEDGITPSIDRIAESLKMSQKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYIAD
NCLENNPWHGVDEWLLKEEVNKLINSTLQERERDIIRLYHGLDDKCLTWEDISKRIGLSR
ERVRQVGLVALEKLKNAARKRNMEAMLMKH
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgatggccacggcagctgttattggacttactgcaggaaagaggcttttgaattcctcc
tcctattactctgatattactgagaggctctcttatgtcggtgatcatggattcacgcat
tgccaatcctgttcgacaaagaatgtgatagttgccaagagggatttgaactacagcccc
agttttccagcattggatcagaacatacagacgattaaggcccttaaagagcacgtcgat
actgctgctgtcccttcagctgaggagatgtggtatcagaggtccaatgagtttgaagat
gaaatctctgattttgactcttcattggaggctcttcttttgctgcaaaagtctatgctg
gaaaaacaatggaacctttcattcgagagcgcagcaatagctgaatcaccaagagaaaaa
actcacaagaagatacctatcacttgttctggtatttctgctcggcaacggagaataaat
tttaggaggaaaacttcaaaccaaaataaatcattagtgcaacctaatggccgtatgcag
ctaaaatcaagtatcagtccagagttgattccaaatcgttcgaaggggggctatgtgaag
ggtgcaataagtgagcaacttctcccacatgcagaagttgtgcggctgtctgaaataatt
agaattggcctttccttagaggagcggaaatccaggctgaaggagagattagggactgat
cctactgatgaacaacttgcaacttccttgagaatctctcgctctgaactacaatcaaaa
ctgatggagtgttctctggcaagggagaagctggcaatgagcaatgttcggctagtcctg
tctattgcacaaagatacgagaacatgggtgctgaaatgggagaccttgttcagggtggc
ctgattggactattgcggggcattgagaaattcgaatcttcaaaagggttcaagatttca
acttatgtgtattggtggatacgtcagggtgtttcaagagcattaattgacaactctaaa
actttaagattgccaacacatttacatgaacggttaggactaattcggaatgctaagatt
aagctgcaagaagacggaataactccgtctattgatagaattgcagaatccttgaaaatg
tcacaaaagaaagttaggaatgctacagaggcaattagtaaggtcttctcccttgatagg
gatgcattcccgtcactgaatggtcttcctggagagacgcatcatagttacattgcagat
aattgtctggagaacaatccgtggcatggagtagatgagtggttgcttaaggaagaagta
aacaagctcatcaactcaacacttcaagaacgggagagggacattatacgtctttaccat
ggtctggacgacaaatgtcttacatgggaggacattagtaaacggataggtttgtcaaga
gaaagagtacggcaagttggacttgtcgcactagagaaactaaaaaacgctgcaaggaag
agaaacatggaggctatgctaatgaaacattag
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