Tripterygium wilfordii (thunder duke vine): 120016591
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Entry
120016591 CDS
T07256
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120016591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120016591
03012 Translation factors [BR:
twl03012
]
120016591
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120016591
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120016591
Translation factors [BR:
twl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120016591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
NACHT
ATPase
AAA_19
Dicer_dimer
NPHP3_N
ABC_tran
AAA_16
AAA_23
ATPase_2
LHD_TRPY1
Myosin_head
Motif
Other DBs
NCBI-GeneID:
120016591
NCBI-ProteinID:
XP_038725358
LinkDB
All DBs
Position
15:complement(255098..266026)
Genome browser
AA seq
1217 aa
AA seq
DB search
MNYSASILQGCIRTTTTMSVRPTSLNFHKTPKTLKPSLFFPSVSMRAQTLPQKTVYYVPR
YLRPKVVRSSGSGITCLSASASSRSSGLDFRSVALPYLRQQNSNYGRYAYRDESSDDSDY
ELGSPQQQTGASTVDNIDEWRWKLTMLLRNKDNQEVVSKEKKDRRDFEQLSALASRMGVH
CRQYAKVVVFSKEPLPNYRSDLDDKRPQREVTLPFGLQMEVDAHLQAYLSLKSMDRARFS
DNTFSRSNTDGSITTDDGLYERQEPVMQNSVIMERILRRKSLQLRNKQQDWQDSPNGQKM
LEFRRSLPAYKERDSSLKVISENQVVVISGETGCGKTTQLPQFILESEIEAARGAACSII
CTQPRRISAMSVSERVAAERGEQLGESVGYKVRLEGMKSRDTRLLFCTTGMLLRRLLVDR
NLRGVTHVIIDEIHERGMNEDFLLIVLKDLLPRRPELKLILMSATLNAELFSSYFGGAPT
IHIPGFTYPVREHFLENILETTGYGLNSYNQIDDYGQEKVWKMQKQAQAFRKRNSQIASA
VEDALEYADFKGYSPRTRESLSCWNPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDI
NALKEQLRAHPLLGDPSRVVLLACHGSMASSEQRLIFDKPEEGVRKIVLATNMAETSITI
NDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVH
DAFADYQMPELLRTPLQSLCLQIKSLQLGSISDFLSRALQPPEPLSVQNAVEYLKIIGAL
NENENLTVLGRNLSILPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDL
AESAKAQFSARDYSDHLALVRAYEGWKDAERQQSGYEYCWRNFLSAQTLRAIDSLKKQFF
CLLKDAALVDNVENCNRWSNDEHLVRAVICSGLFPGICSVMNKEKSIALKTMEDGQVLLH
SNSVNAVEPKIPYPWLVFNEKVKVNAVFLRDSTGISDSVLLLFGGNLSQGGLDGHLKMLG
GYLEFFMKPTLAETYLNIKRELDELIQKKLLTPTLGMQFHDELLSAVRLLVSEDRCEGRF
VFGHQAIAPSKKASKATLPRSPLRGETEIEGANFKNKLQTLLARARHEAPTYKTKQLKNN
QFCATVIFNGLNFEGQPCSSKKSAERDAAGQALVWLKGDRRSSPRDLDHVSMLLKKSKSK
GKSKSQKKTSLSGAKWD
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgaactattctgctagtattttacaaggttgtatcagaaccacgaccaccatgtccgta
cgacccacttctctcaatttccacaaaacccctaaaaccctaaagccctcacttttcttc
ccgtctgtttcaatgagggcccagaccttgcctcaaaagactgtgtattatgttccccgt
tacttgaggcccaaggtggtaaggtcctctggttctgggattacgtgtttgagcgcatct
gcttcttccaggagctctgggttggatttcaggagcgtggccttgccgtatctgcggcag
cagaactcaaattatggccggtacgcgtaccgggatgagtccagcgatgattctgattac
gaattaggttcgccacagcagcaaacgggtgcttcaacggttgataacattgatgagtgg
agatggaagctaaccatgcttctgcgcaacaaagacaatcaagaagttgtgtcgaaagag
aaaaaggacagacgtgattttgagcaactttcagcactggcaagcagaatgggtgtacat
tgccgtcaatacgcaaaagtagttgtcttcagtaaagagcctctgccaaattacagatct
gatcttgatgataagcgtccacaaagagaagtgaccttaccttttggacttcaaatggaa
gtagatgctcatcttcaagcttacctatccctgaagtccatggatagggcaaggttttca
gataataccttttcaagatcaaacactgatggaagtataaccacagatgatgggctttat
gaacggcaggagcccgtgatgcaaaatagtgttatcatggagagaatccttcgacgtaaa
agtttgcaattgcgtaataagcaacaagattggcaggattctcccaatgggcaaaagatg
cttgaatttcgtagaagtctgcctgcatacaaagagagggattcttcattaaaagttatt
tcagaaaatcaggtggttgtcatttcaggggaaactggttgtgggaagaccacacaactt
cctcaatttatactagaatccgaaattgaagctgctcgtggagctgcctgtagtatcata
tgcactcaacctagaagaatatctgctatgtctgtttctgaaagagtcgctgcagagcga
ggagagcagcttggtgaatctgttggttataaagttcggctagaaggcatgaaaagtagg
gacactcgccttcttttttgcacgactggcatgctattgaggagattactggttgacaga
aatctgaggggtgttactcatgttatcattgatgagattcatgaacgtggaatgaatgaa
gattttcttcttatcgtcttgaaggatctccttcctcgtcgaccagaattaaagttgatt
ctgatgagtgcaactctaaatgcagagcttttctcttcttacttcggtggtgccccaaca
attcatattcctggttttacttatccggttcgagaacattttttggagaacattcttgaa
acgactggatatgggttgaattcatataatcaaatcgacgactatggtcaggaaaaggtt
tggaaaatgcagaaacaagcacaagctttcagaaagagaaatagtcaaattgcttctgct
gttgaggatgcgctcgaatatgctgattttaaggggtatagtccacgtactcgtgagtcc
ttgtcgtgctggaatcctgactcaattggctttaacctaatagagcatgtgctttgccac
atagtcaagaatgaaagacctggtgctgttttggttttcatgactggttgggatgacata
aatgctttaaaggagcaactccgagcccaccccctgttgggtgatcctagtagagttgta
ttgcttgcttgccatggttccatggcaagctctgagcagaggttaatatttgataagcct
gaggaaggggtgaggaagatagttctagctactaacatggctgagactagcatcaccatc
aatgatgtggttttcgtggttgattgtggaaaagcaaaagagacatcatatgatgcacta
aataacactccttgtttgcttccatcatggatctcaaaggcagctgcgcggcaaagaaga
gggagagctgggcgtgttcaacctggcgaatgttaccatctctatcctagatgtgtacat
gatgcatttgctgattaccaaatgcctgaactcttaaggacgccattgcagtctttatgc
ttgcaaatcaaaagtttgcaacttggaagcatttcagatttcctgtctagggccttacag
ccccctgagccgctctcagttcaaaatgctgttgaatacttgaagataattggggcttta
aatgagaatgaaaatttgacagtcttaggacgcaacttatcgattcttccagttgaacca
aaacttgggaaaatgctgatattaggagctattttcaattgccttgatccggtaatgact
gttgttgctggtcttagtgtcagggatccattcttaatgccctttgacaagaaagatctt
gctgaatctgcaaaagcccaattctctgctcgcgactatagtgaccatcttgcacttgtc
cgagcatatgaggggtggaaagatgctgaaaggcagcaatctggttatgagtattgttgg
agaaattttctttctgcacaaactctgagagcaattgactctctaaaaaagcagtttttc
tgtctactgaaggatgctgctttggttgacaatgtggaaaactgcaataggtggagtaat
gatgagcatcttgttcgagcagtcatctgttcaggcctgttccctgggatatgttctgtt
atgaacaaagagaagtctatagcattgaaaacaatggaggatggccaggttcttctccac
tcgaattctgtgaatgctgttgaacccaagattccatacccatggctagttttcaatgaa
aaggtgaaagtgaatgcagtattcctcagagattcaactggtatatctgattctgtgctg
cttttatttggagggaacctttctcagggtggactagatggacacctaaaaatgttagga
gggtacttggaattcttcatgaaacccacattagcagaaacttacttgaacataaagaga
gaacttgacgaattaattcagaagaaacttctgactcctacgttgggcatgcaattccat
gatgagctcctatctgcagtaagattgctggtctctgaagatcgatgtgaaggtagattt
gtttttggtcaccaggctatagcaccctcaaagaaggcatcaaaagcgacattaccaagg
tcacctttacgaggtgagactgaaattgagggtgctaatttcaagaataagctacaaaca
ttgcttgctcgggcacgacatgaagctcccacctataagacaaaacaacttaaaaacaac
cagttctgtgctactgtgatcttcaatgggttgaactttgaggggcagccttgcagcagt
aagaaatcagcagagagggatgcagctgggcaggctctggtgtggttgaagggcgacaga
cggtcatctcccagagatcttgatcatgtttcaatgcttttaaagaagagcaagagcaag
ggcaagagcaaaagtcaaaagaaaacttcacttagtggtgctaagtgggattaa
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