Tripterygium wilfordii (thunder duke vine): 120016780
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Entry
120016780 CDS
T07256
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120016780
09123 Folding, sorting and degradation
03018 RNA degradation
120016780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120016780
03041 Spliceosome [BR:
twl03041
]
120016780
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120016780
mRNA cycle factors
Stress granule specific factors
120016780
Spliceosome [BR:
twl03041
]
Complex C
Other components
Complex C specific factors
120016780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_Nup35
RRM_3
RRM_7
RRM_RdRP1_2
RRM_MARF1
DUF5062
GH97_C
BRAP2
Motif
Other DBs
NCBI-GeneID:
120016780
NCBI-ProteinID:
XP_038725626
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All DBs
Position
2:1586197..1591096
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AA seq
639 aa
AA seq
DB search
MAQVQQQGTDAAANAGGGANQMVTTSLYVGDLDHNFTDSQLYDLFNQVGQVVSVRVCRDL
TTRKSMGYGYVNYSNAQDAARAMDVLNFTPLNGNPIRVMYSHRDPSVRKSGAGNIFIKNL
DKAIDHKALRDTFSAFGTILSCKVATDASGQSKGYGFVQFDNEESAQKAIEKVNGMLLND
KQVYVGPFLRKHERETTIDKIKFNNVFVKNLSESTTDEDLKKCFGEFGTITSAVVMRDGE
GKSRCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKKSERETELKLRFDQSMKED
KYEGANLYIKNLDDSIDDDKLKELFSQFGSIISYKVMRDPNGMSKGSGFVAFSTPEEASR
AMLEMNGKMVINKPLFVALAQRKEDRRMKMQAQFSHMQPAMAASVAPRIPMFPAGSPGLG
QQLFYGQGPPAMIPPQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQRPGGRRTGVAQQ
SQQPLPLMQQQQMLPRGRMNHYPPGRGLSDVPMPGVAGSMVSVPYDMGGMQLRDATPQPI
PIGALASALANASPDQQRTMLGESLYPLVEQLETDAAAKVTGMLLEMDQTEVLHLLESPE
ALKAKVAEAMVVLRNVAQHQQAGSAADQLSSLSLNDLVS
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggtacagcaacagggtacggatgccgctgcgaacgctggtggtggggccaat
cagatggtcacgacgtcgctttacgttggtgatttggaccataactttaccgattcgcaa
ctctacgatctgttcaaccaggtcggccaggtggtctcggttagggtttgcagggacttg
acgacccgaaagtccatgggttatggttatgtcaactacagcaacgctcaagatgctgca
agagcgatggatgtgctgaatttcactcccctcaatggcaacccgataagggtcatgtat
tctcatcgtgacccaagtgttcgcaaaagtggagctgggaatatattcattaagaacttg
gataaggctattgaccacaaagctctgcgagatacattttctgcatttggaaccatcctc
tcctgcaaggtggctacagatgcttctgggcagtcaaaaggatatggatttgtccaattt
gacaatgaggaatctgcgcaaaaggcaattgagaaggtgaacggtatgcttttgaatgat
aagcaagtttatgtgggacccttccttcgcaaacacgaaagagaaacaactattgataag
atcaaattcaacaatgtctttgtgaagaatctctcagaatctacaactgatgaagatttg
aagaaatgttttggtgaatttggaacaatcactagtgctgtggtgatgagagatggggaa
ggaaaatcgagatgctttgggtttgtcaattttgaaaatgcagatgatgctgcaaaggct
gtggaggctcttaatgggaagaagtttgatgataaggaatggtatgttgggaaagctcag
aagaagtctgaaagagaaactgaattaaaacttagatttgaccagagtatgaaggaagac
aaatatgaaggggcgaacttgtatattaaaaacttagatgatagcatagatgatgataaa
ctgaaagaattgttctctcagtttggttccataatatcatacaaggtcatgcgagatcca
aatgggatgagtaaaggatcagggttcgtggcattttctactcctgaagaggcgtctaga
gctatgttggagatgaatggcaaaatggtcattaacaaacctctttttgttgcacttgct
caacgaaaggaagatagaagaatgaaaatgcaggctcagttttctcacatgcagcctgct
atggcagcttcagttgctcctcgtataccgatgttccctgctggcagtccaggtcttgga
cagcaactattttatgggcaaggcccacctgctatgatacctccccagcctggatttggg
tatcagcaacagcttgttcctggcatgaggcctggtggggctcctatgccaaattttttt
atgccaatggttcaacaggggcagcgtcctggtggcagacgaactggggttgctcagcag
tcccagcagcctctcccacttatgcagcagcagcagatgcttcccaggggtcgcatgaat
cattacccacctgggcgtggtttgtctgatgttcccatgcctggcgttgctggaagcatg
gtttctgttccatatgacatgggtggtatgcagctgcgtgatgctacccctcagccgatt
cccattggggctttggctagtgcccttgcaaatgcgtctccagatcagcaaagaacgatg
ctcggtgagagcctttacccacttgtggaacagctggagactgatgcggcagctaaggtt
acaggaatgcttcttgagatggatcagaccgaggttttgcatttgcttgagtcgccagaa
gctctcaaggcaaaggttgctgaggcaatggtcgttttaaggaacgttgctcagcaccag
caagcaggcagtgcagctgatcaattgagctcgctgtcattgaatgaccttgtctcttaa
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