Tripterygium wilfordii (thunder duke vine): 120016871
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Entry
120016871 CDS
T07256
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120016871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
120016871
03019 Messenger RNA biogenesis [BR:
twl03019
]
120016871
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120016871
RNA polymerase I system
120016871
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
120016871
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
KOW2_Spt5
Spt5-NGN
KOW4_SPT5
KOW
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
120016871
NCBI-ProteinID:
XP_038725756
LinkDB
All DBs
Position
15:complement(10117579..10128152)
Genome browser
AA seq
1038 aa
AA seq
DB search
MARHREFEDDEELDPEEEDYAFDEEDLEEERGASNRKRRRSDFIDDLAEEDEDEYEEEEE
DDDDDYGGGGGGARRRKPKRRTASDFLDIEAQVDTDEEEEEEDGEDDFIDRTGAELGDED
DRRIHRRPLLPREDEQEDVEALERSIQARYARSSHAAEYDEETTDVDQQALLPSVRDPKL
WMVKCAIGRERETAVCLMQKYIDKGSELQIRSAVALDHLKNYIYIEADKEAHVREACKGL
RNIYAQKIMLVPIREMTDVLSVESKSIDLSRDTWVRMKIGTYKGDLAQVVDVDNVRQRVT
VKLIPRIDLQALANKLEGREVPKKKAFVPPPRFMNVDEARELHIRVERRRDPMTGDYFEN
IGGMLFKDGFLYKTMSMKSISSQNIKPTFDELEKFRKPGEHGDGDMANLSTLFVNRKKGH
FMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNQKELCKYFEPGNHVK
IVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGEYELHDL
VLLDNRSFGIIIRVESEAFQVLKGVPERPEVSLIKLREIKCKLEKKFDGQDRYKNTVSVK
DIVRILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICAKSDSCIVVGGSRANGGRNG
DAYSRLSSFKTPSRIPPSPRNFHRGGPPINSRGQNRGGRGGHDALVGTTVKIRQGPFKGY
RGRVVDVKDQSVRVELESQMKVVTVDRKSIADGVAVSTPFRDTPHRYGMGSETPMHPSRT
PLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPG
SPSRAYEAPTPGSGWANTPGGNYREAGTPRDSSSSYANAPSPYLPSTPGGQPMTPSSAPY
LPGTPGGQPMTPGTGGLDVMSPVIGSENEGPWFMPDIQVNVRRLGDDSVGVIREVLPDGT
CRVALGSNGNGETLTVSPSEIEIVAPRKSDKIKIMGGGQRGATGRLIGVDGTDGIVKVDD
TLDVKILDMVLLAKLAQP
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtcaccgagaattcgaagacgacgaagagctggaccccgaagaggaggattac
gcgttcgacgaggaagatttagaagaggaaagaggggcttcgaataggaagcgcaggaga
tcagatttcattgatgatttggctgaggaggacgaggacgagtatgaggaggaggaggaa
gacgacgacgatgattacggcggcggcggtggtggtgctaggaggcgaaaacctaagagg
cggaccgcgtcggactttttggatatagaggcgcaagttgataccgatgaggaggaagaa
gaggaggacggggaggacgacttcatagatagaactggagctgagctaggtgatgaagat
gatagaaggatccatcgacggccattgcttcctcgtgaggacgaacaagaagatgttgaa
gctctggagagaagcattcaggcaagatacgcaaggtcaagtcatgcagcagaatatgat
gaggagactacagatgttgaccaacaagcacttctaccatctgttcgggatccaaagttg
tggatggtcaaatgtgcgattggtcgtgagcgagagacggctgtttgcctaatgcaaaag
tatatcgacaaaggatctgaattacaaatcaggtctgcagttgcccttgatcatctgaag
aactatatatatatagaagcagacaaagaagcccacgtgagggaggcatgtaaaggccta
cgcaatatatacgcccagaaaataatgcttgtcccaatccgtgaaatgactgatgttctt
tctgttgaaagcaagagcattgatctttctagggacacctgggtcagaatgaaaatcgga
acttacaaaggcgaccttgcacaggttgttgatgtggataatgttaggcagagagttaca
gttaaactaattccaaggattgacttacaagcacttgcgaataagttggaaggtagagag
gttccgaagaagaaggcatttgttcctcctccacgttttatgaatgtcgatgaagctagg
gaactgcatatacgagtagagcgtcgacgggatccaatgactggtgattactttgagaac
attggtgggatgctatttaaagatggtttcttatataaaactatgtcgatgaaatcaatt
agctctcaaaatataaaacccacttttgatgaacttgaaaagtttcgaaagcctggagag
catggagatggagatatggcgaatttgtcaacgttgtttgtaaataggaagaaaggtcat
tttatgaagggtgatgctgttattgttgtgaaaggagatctgaaaaacttaaaaggatgg
gttgagaaagtggaggaagagaatgtccatattagacccgaaatgaagggtcttccgaaa
actcttgctgtcaatcaaaaagagctttgcaaatattttgaacctgggaatcatgtcaag
attgtctctggaacacaagaaggagcaactggtatggttgttaaggtggagcagcatgtt
ctgatcattctctctgatacaacgaaggaacacatccgtgtctttgctgatgatgttgta
gagagctctgaggtgactactggtgttactaaaattggggagtatgagctccatgatctc
gtattactagataataggagcttcggcattattatacgtgtggaaagtgaagcatttcag
gttcttaagggagttccagaaagacctgaggtcagtcttattaaattacgagagatcaaa
tgcaagttagagaagaagttcgatgggcaggatcgatacaagaatactgtatcagttaaa
gacattgttaggatcctggagggtccttgcaaagggaaacaaggacctgtagagcacata
tatagaggagtcttgttcatctatgatcgccatcacctcgagcatgctgggtttatttgt
gctaaatccgattcttgtattgttgtgggtggatctcgtgccaatggtggtagaaatggt
gatgcttactcccggcttagcagcttcaaaactccgtcacgtatacctccttccccaagg
aattttcatagaggaggccctccaattaattctcgaggacagaatagaggtggaagaggt
ggacatgatgctttggttggtacaacagtaaaaatacgtcagggtccctttaagggttac
cgaggtcgagttgtagatgttaaagaccagtcagttagagtagaattggagtcccaaatg
aaggttgtcacagttgatcgcaagtctattgctgatggtgttgccgtttcaaccccattc
cgtgatacacctcatcggtatgggatgggaagtgagactcccatgcatccttcgcggact
ccgttgcatccatatatgactcctatgagagattctggagcaacacctattcatgatggc
atgaggacacctatgcgtgaccgagcatggaatccttatacgcccatgagtccaccaagg
gataattgggaagatgggaatcccggctcttggggaacaagtccacagtatcagccagga
agtccttcgcgggcatatgaagcaccaactcctggttcaggctgggcaaacacccctggt
ggcaattatcgtgaagctggaacaccaagagacagcagttcttcttatgcaaatgctcca
agcccatatctgccatcaactcctggtgggcagccaatgacgccgagctcagcaccctat
cttcctggcacacctggaggacagccaatgacacctggaacgggaggcctcgatgttatg
tcgcctgttataggttctgagaatgaaggaccgtggttcatgccagacatccaggttaat
gtacgcaggttgggagatgattctgttggtgtcatccgagaggtgcttccggatggaact
tgtagggtagcccttggttcgaatggcaatggtgaaactctgacagtaagtcccagtgaa
attgagattgtggctccaaggaaatcagataagataaagatcatgggtggtgggcaacgt
ggagccactggtagattgattggtgtagatggcactgatggaattgtaaaagtagatgac
actcttgatgttaagattttagacatggttttactggcaaaactggcacaaccatga
DBGET
integrated database retrieval system
