Tripterygium wilfordii (thunder duke vine): 120016875
Help
Entry
120016875 CDS
T07256
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120016875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120016875
03041 Spliceosome [BR:
twl03041
]
120016875
03009 Ribosome biogenesis [BR:
twl03009
]
120016875
03016 Transfer RNA biogenesis [BR:
twl03016
]
120016875
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120016875
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120016875
Spliceosome [BR:
twl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120016875
Complex C
U4/U6.U5 tri-SnRNP related factors
120016875
Ribosome biogenesis [BR:
twl03009
]
Eukaryotic type
Pre-60S particles
Helicases
120016875
Transfer RNA biogenesis [BR:
twl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120016875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120016875
NCBI-ProteinID:
XP_038725767
LinkDB
All DBs
Position
15:1895835..1905900
Genome browser
AA seq
983 aa
AA seq
DB search
MGSLKRKAVEESSGEEIFLAQKQQREDESVACVHDVSYPEDWVPPPSSSAQRDSTPAKEF
PFTLDPFQTEAIKCLENNESVMVSAHTSAGKTVVALYAIAMSLQNKQRVIYTSPIKALSN
QKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIIFDEVHY
MRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFSDWVAKVHLQPCHIVYTDYRPTPL
QHYIFPAGGDGLYLVVDEKGKFREDSFQKALNALVPKVEGDKKRENGKWQKGLAMGKVGE
ESDIFKMVKMIIQHQYDPVILFSFSKRECEFLAMQMAKMDLNEDDEKANVETIFWSAMDM
LSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLN
MPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDEKLEPSTAKM
MVKGSADSLNSAFHLSYNTLLNQIRCEDGDPENLLRNSFYQFQADRAIPDLEKQAKMLEK
ERDSMIVEEEDSVQNYYNLLQQHKSLKKDVRDIVFSSKYCVPYLQSGRPICIQCTLGDES
QSFTVEDPVTWGVIVNFERVKSLSEDDSSRKSEDAKFTVSVLTRCVVSREGVVKKTIKIV
PLKQAGEPLVVSVPISQIKGLSSARLYMAKDLLPLETRENTLKQLAEFLARNADGLPLDP
EGDMKIKSSSYKKAVRRIEALEHLFKKHKIANSPLIVQKLKVLHTKQELKAKIKSIQKTM
RSSTALAFKDELKARKRVLRRLGYITHDDVVELKGKVACEISSADELTLTELMFNGVLKD
MKVEEMVSLLSCFVWQEKLQNATKPREELDLLFSQLQDTARRVAKVQLECKVQIDVESFV
SSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAAKSIGETEL
ETKFEEAVSKIKRDIVFAASLYL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgggatcattgaagaggaaggctgtcgaggagtcatcgggggaggaaatttttcttgcg
cagaagcaacaaagagaggatgagtcagtggcctgcgtgcacgacgtgtcctatccagaa
gactgggttcctcctccatcatcttctgctcaaagggactctacacctgccaaggagttc
ccttttacccttgatcctttccagactgaggccatcaagtgcctcgaaaacaacgagtct
gttatggtttcggcacatacatcagccggtaaaactgtagtagcattatatgctatagcc
atgtctttacagaataagcaacgggttatatacacttcgccaattaaagcactcagcaat
caaaagtacagggagttcaaggaagagttctcagatgttgggttgatgactggggatgta
acaattgatcctaatgcttcttgcttggtgatgactacagaaatctggcgtagtatgcag
tacaaaggatcagaaatcactcgtgaagtggcttggattatttttgatgaggtacattac
atgcgcgatcgagaaagaggtgttgtatgggaagaaagcatagtcatggctccaaagaac
tctcggtttgtatttctatcagcaaccgttccaaatgctaaggaattttctgattgggtt
gcaaaggttcatcttcaaccatgccacatcgtgtatactgactataggccaacacccctt
caacattatatttttcctgctggaggagatggcctgtacctggtggttgatgaaaagggt
aaattccgtgaagatagctttcagaaggctttaaatgcacttgttcctaaggtggagggt
gacaagaaaagggaaaatggaaagtggcaaaagggtttggcgatgggcaaagttggtgag
gaaagtgacatctttaagatggtgaaaatgattattcagcaccaatatgatcctgtcata
cttttctctttcagcaaaagggaatgtgaatttcttgcaatgcagatggcaaaaatggat
ctaaatgaggatgatgagaaagcaaatgtagaaacaattttttggagtgccatggacatg
ctttcggatgatgataagaagctacctcaggtttcaaatatattgcccctcttgaaacga
ggaataggcgtgcatcattccggcttgcttcccatcttgaaggaagtgattgagatatta
tttcaagaagggttgatcaagtgtctgtttgccacagagaccttcagcataggtctgaac
atgcctgcaaaaactgttgtttttacaaatgtccgcaagtttgatggagacaagtttaga
tggatatccagtggagagtacatacagatgagtgggcgagctggtcgtcggggtattgat
gatcgtgggatatgcatcctaatggtggatgagaagcttgaaccttctactgctaaaatg
atggtgaaaggaagtgctgatagtttgaacagtgccttccatcttagctacaacaccctt
ttgaatcaaatacgctgtgaagatggtgatcctgaaaatttgctccggaattcattctat
cagtttcaagctgaccgtgctatccccgatcttgagaaacaagcaaagatgcttgaaaaa
gaaagggattcaatgattgttgaagaagaagatagtgtgcagaattattacaatctgctg
cagcaacacaaaagtctgaagaaagatgttcgtgatattgtgttctcatcaaagtattgt
gtaccttatctacaatctgggaggcctatatgcattcaatgcactctgggtgatgaatcc
caatctttcactgttgaggacccagtaacatggggagttatagtcaattttgagagggta
aaaagtcttagcgaagatgattcaagcagaaaatctgaagatgcaaaattcacagttagt
gtcctcaccagatgtgtggtgagtagggagggagttgtcaaaaagacaattaagatcgtt
ccattaaaacaagctggagaaccccttgttgtttcggttcctatttcccagattaagggc
ttaagtagtgctcgcttatacatggccaaggatcttttgccattggaaactcgagagaat
acgctgaagcagcttgcagaatttcttgcaagaaatgctgatgggctgcccctggatcct
gaaggagatatgaagatcaaaagtagttcatacaaaaaggcagttcgtaggattgaggct
ttagagcacctgtttaagaagcataagatcgcaaattctcctcttatcgtgcaaaagctc
aaagttctacacactaagcaagaattgaaggctaagattaagtctattcagaagacaatg
cgttcttcgactgccttggcattcaaagatgaactgaaggcaagaaaaagggttctccga
agactgggatacattacacacgatgatgttgtggaattgaaaggaaaggttgcttgtgaa
attagcagtgctgatgagctgaccctgacagagctcatgtttaatggcgttttaaaggac
atgaaggtggaagagatggtgtcgcttctctcttgttttgtttggcaggagaagcttcaa
aacgctacaaagcctagagaggaacttgacttgctcttttcacagctgcaggatacagct
aggagagttgccaaagttcagcttgaatgcaaggttcaaattgatgtagagagtttcgtg
agttcatttcggcctgatattatggaggctgtgtatgcttgggcaaagggatccaaattt
tatgagatcatggaaattacacaggtttttgagggtagcttgatcagggcaattaggaga
ctagaggaagttcttcaacagcttatcttagcagcaaagtccattggtgaaacagagctt
gaaacaaaatttgaagaggctgtttccaaaatcaaaagagacattgtgtttgcggcatct
ctatacttgtag
DBGET
integrated database retrieval system
