Tripterygium wilfordii (thunder duke vine): 120016952
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Entry
120016952 CDS
T07256
Name
(RefSeq) cleavage stimulating factor 64-like
KO
K14407
cleavage stimulation factor subunit 2
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120016952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120016952
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120016952
U7-dependent histone pre-mRNA processing factors
120016952
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
RRM_10
RRM_occluded
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
120016952
NCBI-ProteinID:
XP_038725894
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Position
15:complement(6503700..6517279)
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AA seq
556 aa
AA seq
DB search
MASSQHRCVFVGNIPYDVTEEKLIEICKEVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGVGGPGLAANVAQKQLGGLGIH
GESVQHQPIGLHIAITAASAMAGALGGAQIAGQSNQSGLQSQSLPANDPLTLHLASMSRV
QLNELMSDLKVMATQNKEQARQLLLSRPQLAKALFQAQIMLGMATPEVLQTPNLRQPPIQ
PANPSILEGQRGLQPTGESLPEMILRVPMMQSVMIPNFPEGQVSALPQASLVHNQFSGPP
QTLGQPQHANINVVKQGSFQSVPFAHANVRPQIQTASSYLNQQMQPPLPQHAGQLGAANL
VKSNRTILSNAAVQPSLLLHPPSSKATDFQPGPSLPSGISDSANKVADKTAGVANDPTWS
SRSNAYPNVRMGLAEKRIFGDASEASNQPSKLIKLEDGRGASSSIGGLDVPSAIRYVPSQ
AIAVAPVHANPVIKAENVPYSGKQTSQLQVPTDVESALLQQVMNLTPEQLNLLPAEQRQQ
VIQLQQALRREQMQSL
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctctcagcaccgttgcgtttttgttggtaatattccgtatgatgtaacggag
gagaaactcatagaaatctgcaaggaggttgggccggttgtgtcattcagattagttata
gatagagaaactgggaaaccaaaaggctatgggttctgtgaatataaagacgaagagaca
gctctaagtgctcgtcgtaatcttcagggttatgaaatcaatgggagacaattacgtgtt
gattttgcagaaaatgataaaggtgctgacaggaaccgagagcagggtcggggtggagtc
ggtggaccagggctggctgcaaatgttgctcaaaaacagttggggggtctaggaatccat
ggagagtctgttcagcatcaacctattggactccatatagctataactgctgcaagtgca
atggctggagctttaggtggtgctcaaattgctggtcagtcaaatcaaagtggtctccag
agccagtctctaccagcaaatgatcccttaactcttcatctggccagcatgtcacgggtt
caactgaatgaacttatgtctgacctgaaggtgatggctacacagaacaaggaacaagct
cgccagctattgctctcaagaccgcagttggcaaaagctctttttcaggcacagataatg
ctgggaatggcgacccctgaagtgttgcagacgccaaatcttcgacagccaccaatccaa
cctgcaaatccctcaattctagaggggcagcggggtcttcagcctacaggtgaaagtctt
cctgaaatgatcctccgtgtacctatgatgcaatctgtgatgatacccaattttccagaa
ggccaagtgtctgctttgccccaagcctcattggttcataaccaattttctggtccccct
caaactcttgggcagccacaacatgccaatatcaatgttgtaaaacagggctcatttcaa
tcagttccttttgcacatgcaaatgttagaccacagattcagacagcaagttcttacctg
aaccaacaaatgcaacctccattgccacagcacgccggacagcttggtgctgcaaatttg
gtgaagtcaaatcgaacaattctttcaaatgcagctgtacagccttcacttttgcttcat
cctccctcgtcaaaggctactgactttcagcctggcccctcactgccatcaggcatttca
gattcagctaacaaggttgctgataaaactgctggcgttgccaatgatccaacttggagc
agtagaagcaatgcatatccaaatgtacgtatggggttagcagagaaaagaatttttggt
gatgcctcagaagctagtaatcagccatcaaaattgattaaactagaagatggcaggggt
gcctcttcctctataggcggtttggatgttccaagtgctatcagatatgtaccatcacaa
gcaatagcagttgctccagtgcatgctaatccagttattaaagcagaaaatgtgccatat
tctggaaaacagacttctcagttgcaggttcctactgacgtggagtcggccttactgcag
caggtgatgaacctgacaccagagcagttaaatttattgcctgctgaacagcggcagcag
gtgattcaactccaacaggcacttcgtcgagagcagatgcagtcattatag
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