Tripterygium wilfordii (thunder duke vine): 120016977
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Entry
120016977 CDS
T07256
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120016977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120016977
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120016977
mRNA degradation factors
5'-3' decay
Decapping complex
120016977
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
120016977
NCBI-ProteinID:
XP_038725927
LinkDB
All DBs
Position
15:complement(12377722..12385787)
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AA seq
770 aa
AA seq
DB search
MERSDSKDFKDLTGGPSDALFDASQYAFFGQDAVEEVDLGGLDDDGDDPVFGSINNDDYH
LFDKDEDLGIGSLSDVDDLAATYAKLNSVVTGPRDPRVFGNRGSGSFSGESSSATDWVQD
GELGSWLDQKMPCIGDALELNRWPSQPQPSSTHFSESKPLYRTSSYPQQPPQPPQLHHYT
SEPVLISKSNFTSFPPPGGRSQQASPQHPNISSLSGGSGSPFSAPNFSPFSLSNSHLSGL
HHGLDYGGNLPQYSSPELLFNSRAQNHWLNHSGLLHGDQSSLLHNILPQQLSRHNGVFSS
QQQQQQRLHASLQPSLAHLAGVQSQLYQSHPAPTNRMTFGLVQFRSKYMTTDEIESILRV
QHAATHSSDPYTEDYYHQARLAKKSAGSRIKHHFSPFHLKELPSQGRNSAEQHPRAQADV
LGRIPLTSIRRPRPLLEVDHPPSGSGTGSSELGVSEKPLEQEPMLAARITIEHDLCLLLD
IDDIDRFLQFSQQQDGGAQLRHRREMLLEELAASLQLVDQLGNSGHTVALGPKDDIVFLR
IVSLSKGRKLINRFLQLLFPGSELTRIVCMGIFRHLRFLFGSLPSDLGAAETTNNLAETV
SVCINGMDLCALNACLVAVVCTTEQPLLRPLGSPAGDGASVILKSLLDRATKLLSDPQAP
GTCSLSNRSLWQASFDKFFDILAKYCVSKYETILQSVYAQNEPSAEAIGSELTSAISDEM
PVDLLRSSLPHTNESQRKLLLDFAQRSMPISGFHTHSGTSDQINSESVRS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgatagcaaagatttcaaggacctcactggaggtccatcagatgcactc
tttgacgcatcacagtatgcattttttgggcaagatgctgtggaagaagttgatttggga
ggtctggatgatgatggggatgatcctgtgttcggatctatcaataatgatgattaccat
ttgtttgataaagatgaggatttgggtatcggatcattatctgatgtggatgatctagcg
gctacatatgcaaagttaaacagtgttgtcacggggccaagagatcctagagtttttggc
aatagaggttctggatcgttttcaggagaaagttcatctgccactgattgggttcaagat
ggagaacttggaagctggttggatcagaaaatgccttgtataggagatgcactggagctc
aatagatggccatcacagccgcaaccttcctctacccatttcagtgaatcgaagcctctg
tacagaacttcctcgtatccgcagcagccaccgcagccaccccagctgcatcattacaca
agtgaaccggttctcatatcgaaatcaaatttcacatctttccctcctcctggtggcaga
tctcagcaagcttcaccacagcacccgaatatttcttccctttctggtggatcagggtca
cccttctctgctccaaacttctctccattttccctctctaactctcatctgtctggttta
catcatgggttggactatggtggaaatctcccccagtacagctctcctgaacttctgttt
aatagcagggcacaaaaccattggcttaaccacagtggcctattacatggagatcagtcc
agcctcttacataatatattgccacagcaattatctcgccataatggcgtattttcatcg
cagcagcagcaacaacagagactgcatgcttcacttcaaccatctttggcacatttggca
ggagtgcaatcccaactttatcagtcccatcctgcaccaacaaatagaatgacgtttggt
ttggtgcaattcaggtccaagtatatgacgactgatgagatagagagtattcttagagtg
cagcatgctgccactcatagcagtgacccatataccgaggattattaccaccaagctcgt
cttgctaaaaaatctgctgggtccaggataaagcaccatttctccccatttcacctgaag
gaacttccctctcagggccgtaacagtgcagaacagcatcctcgtgcacaggctgatgta
cttgggaggattcccttgacttccattcgcaggcctcgtccccttcttgaagttgaccat
ccaccctctggttctggtactggaagttctgagctaggagtctctgagaagcctctggaa
caggaaccaatgcttgcagctagaatcactattgaacatgacctttgcctacttcttgat
atagatgatattgacaggttcttgcaatttagccagcaacaagatggtggggcccagcta
cggcatcggcgggagatgctgctggaagagttggctgcatcacttcagcttgttgatcaa
cttggcaacagtggccacactgttgccctaggccccaaggatgacattgtgtttctacga
atagtctctctctcaaagggaagaaagcttatcaataggtttctccagcttctctttcct
ggtagtgaactcacccgaattgtttgtatgggcattttccgtcatttgagatttttgttt
ggcagtcttccttcagatttgggagcagctgagactactaataatctggccgagacagtt
tctgtttgtatcaatggcatggatctttgtgcacttaatgcttgtctagtcgcagttgtt
tgtacaacagagcagccgctgttgcgcccccttggaagccctgctggggatggggcctct
gttattttaaagtctctacttgatcgggcgactaagttgttatctgatcctcaggctccc
ggcacctgtagcttgtcaaatcggtccctctggcaggcatcatttgacaaattttttgat
atccttgctaagtattgtgtgagtaaatatgaaactatattgcaatcagtctatgctcaa
aacgagccaagtgcagaggctattggttcagaattaacgagtgcaataagtgatgaaatg
cctgttgatctcctgcgatcaagtctgccacacacaaatgaaagccagcggaagcttcta
ttagattttgctcagagatccatgcccattagtggattccatactcattctgggacaagt
gaccaaataaactctgagtcagtgagaagttaa
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