Thiothrix winogradskyi: L2Y54_00470
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Entry
L2Y54_00470 CDS
T08347
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
twn
Thiothrix winogradskyi
Pathway
twn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2Y54_00470 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twn03021
]
L2Y54_00470 (rho)
03019 Messenger RNA biogenesis [BR:
twn03019
]
L2Y54_00470 (rho)
Transcription machinery [BR:
twn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
L2Y54_00470 (rho)
Messenger RNA biogenesis [BR:
twn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L2Y54_00470 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
UJS24535
UniProt:
A0ABY3SZH1
LinkDB
All DBs
Position
complement(86537..87796)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLSELKKKSAAEVFEMAQAMGIESISRTRKQDIIFALLKANAANNVDIHGDGVLEILQD
GFGFLRSDDSSYLAGADDIYVSPSQIRRFGLRTGDTVSGKIRPPKDSERYFALLKVDTIN
FEPPESARNKIAFENLTPLHADKRMRMERGNGSREDITARVIDIVAPFGKGQRGLIIAPP
KAGKTIMLQNIAQSIASNYPESYLIVLLIDERPEEVTEMSRMVQGEVVSSTFDEPAARHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEIHLDRRISEKRVFPAINI
NRSGTRREELLTTQDELQTLWVLRKFLHSMDDLDAMELLFDKLSKTKTNSEFFDVMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgtctgaactcaaaaagaaatctgccgccgaagtctttgaaatggcacaagcc
atgggaatcgagagcatttctcgcacccgcaaacaagacatcatctttgccttgctgaaa
gccaatgcagccaacaacgttgacatccacggggatggcgtgctggaaatcctgcaagac
ggttttggtttcctgcgttccgatgattccagctatttggctggggcggatgatatttac
gtttcccccagccagattcgccgctttggtctgcgtaccggtgatacggtatcgggtaag
attcgtccgccgaaggacagtgagcgttactttgcacttctgaaagttgacaccattaac
ttcgagccgcccgaaagtgcgcgtaacaaaattgcctttgaaaacctgaccccgctgcac
gccgataaacggatgcgcatggagcgtggtaacggcagccgtgaagacattactgcccgc
gttatcgacatcgtagcgccgtttggtaaaggtcagcgtggtttgattatcgcgccgccg
aaggccggtaaaaccattatgctgcaaaacattgcgcagagcattgcctctaattacccg
gaaagttacctgatcgtgctcttgatcgacgaacgcccggaagaggtgacggaaatgtca
cgcatggtgcaaggcgaagtggtgtcttcgaccttcgatgaaccggcagcgcgtcacgtt
caggttgccgaaatggtcatcgaaaaagccaagcgtctggtcgaacacaagcgcgacgtg
gtgattttgctggactccattacccgcttggcgcgggcttacaataccgtggtgccgtcg
tctggcaaggtattgacgggtggtgtggatgcgaatgccttgcatcgccccaaacgcttc
ttcggtgcggcgcgtaatattgaagaaggtggtagcttgaccattattgccaccgcgctg
attgataccggttccaaaatggacgaggttatctacgaagaattcaagggcacgggcaat
atggaaatccatctggatcgccgtatttccgagaagcgtgtattcccggcgattaacatt
aaccgttccggcacccgtcgcgaagagttgctgaccacgcaagacgaactgcaaaccctg
tgggtgttgcgtaaattcctgcacagcatggatgatctggatgcaatggaattgctgttc
gacaagctttccaagaccaaaacgaatagtgaattcttcgacgtgatgcgtcgcgggtaa
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