Thiothrix winogradskyi: L2Y54_02825
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Entry
L2Y54_02825 CDS
T08347
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
twn
Thiothrix winogradskyi
Brite
KEGG Orthology (KO) [BR:
twn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twn03019
]
L2Y54_02825 (hrpA)
Enzymes [BR:
twn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L2Y54_02825 (hrpA)
Messenger RNA biogenesis [BR:
twn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L2Y54_02825 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_23
SLFN-g3_helicase
NACHT
nSTAND_NTPase5
AAA_25
PhoH
ABC_tran
AAA_30
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
UJS24984
UniProt:
A0ABY3T2I0
LinkDB
All DBs
Position
508671..512411
Genome browser
AA seq
1246 aa
AA seq
DB search
MSNLIQRRALRLQNLPKPTYPEELPVAARRADILAAIQAHQVVIICGETGSGKTTQLPKM
CLELGRGVDGFVGHTQPRRIAARSVAARIAEELNTQLGQQVGYKVRFHDRCSPDSYIKLM
TDGILLAEIQQDRYLRQYDTLIIDEAHERSLNIDFLLGYLKWLLPKRRDMKIIITSATID
PERFSRHFDNAPIINVSGRTYPVDIRYRPLIDVDAEEEFERDQTQAILDAVDELGREAPG
DILIFLPGEREIRETAEALRKHHPPATEILPLYARLSNEEQHRIFEPHGQRRIVLATNVA
ETSLTVPGIKYVVDSGYARISRYSWRAGVQRLPIEKVSQASANQRSGRCGRVSNGITIRL
YSEDDYNKRPVFTEPEILRTNLAAVILQLATMWTADIEGFPFVEPPDTRLIRDGYKLLFE
IGAVDKNFNVTSSGHQLAKLPLDPRFGRMLLAANDNGALREVLIIVSALTLQDPRERPLD
KQQAPDEKHARFKDEQSDFLSFLKLWDYFHEQRKHLSQRKFRELCQKEFLSYMRLREWHD
IHTQLHQMVLEMGGKENDAPASYDAIHLSLLTGLLGNIGMKDEEREYMGAGGRKFHIFPA
SHLRKKPPQWVMAAELVETSRLFGRTIAKIQPEWVEKLAEHLLRHHYTEPHWEQKQAQVA
AFERTSLYGITITPRRKVSYGRIDPVTCREIFIRHALVYGEYRTAAPFFQHNAELIADIE
MLEAKARRRDILTDEHRLYAFYDERLPAHIVNGHSFERWRKKAEQHDSQLLYLTHAYLMQ
RDAGHEKSGQFPDSLQVQGMILPLRYHFDPKAEDDGVTVRLPLLGLNQLNPIRFEYLVPG
MLEEKITALIRALPKHIRKQFVPAPDYARACMEAIEPSDTLPLQTSVEKQLLRMSGSQIP
PEAWAAITLETHLQMRFEVADEAGKVIRSGRDLDTLRGKVHAQTRAELASKPVQSIERVG
ITTWDFGDLPELYWLEAGGMKLRTWPALVDANNSVSIRLFDNEADASNAHWQGVLRLFWL
ALPAEVKDVPKYVPQMQTLCLHYAATGKCEELKDSITRYVFRQAFKNHLSIRKQDSFTHA
LGECRSQIFPQTQETARLLTPILALYHDLRKQLKGKVQPAWLEALNDISEQLNHLVYVGF
LDAVSPEELRHFPRYLKGIQRRLQKLAENPTKDRALRVQVQPYWDQWKAASTTLSQRRSL
SEVEGNWHEYRWMLEEFRVSLFAQELGTARPVSAKRLDELWKKAQP
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacctcattcaacgccgcgctttgcgcctgcaaaatctgcccaagcctacttac
cctgaagaacttccggtcgccgctcgccgtgcagatattctcgccgctattcaagcgcat
caagtcgtcattatttgcggggaaaccggctcaggcaaaaccacccagctccccaaaatg
tgcttggaattggggcgtggcgtggatggctttgttggtcacacccaaccccggcgcatc
gctgcccgcagtgtcgccgcccggattgccgaagaactcaacacacaactcggtcagcaa
gtcggttacaaagtgcgtttccacgaccgctgttcgccggatagttacataaagcttatg
actgacggtattttgctggcagaaattcagcaagatcgctacctgcgccagtacgacacc
ctgattatcgacgaagcacacgaacgcagcctcaatatcgacttcctactcggctacctc
aaatggctcttgccgaaacgccgtgatatgaaaattatcatcacctcggcaacaattgac
ccggaacgcttttcacgccatttcgacaatgccccgatcatcaatgtgtcagggcgaact
taccccgtcgacatccgctaccgccccttgatcgacgtggatgccgaggaagaattcgag
cgcgatcaaacccaagccattctcgatgcggtcgatgaattagggcgcgaagcccccggc
gatattctgattttcttacccggcgaacgtgaaatccgcgaaactgccgaagccttgcgc
aaacaccacccgcctgccaccgaaatcctgccgctgtatgcgcggctttccaacgaagag
cagcaccgtattttcgagccgcacgggcaacgccgcattgtgttagccaccaatgtcgcg
gaaacttccctcaccgtgcccggcatcaaatacgtcgtcgacagcggctatgcccggatt
tcacgctattcatggcgagctggcgtacaacgcttgccgattgaaaaagtctcacaagcc
tccgccaaccaacgctctggacgctgcggacgagttagcaacggcatcaccatccggctt
tacagcgaagacgattacaacaaacgccccgtgtttaccgaaccggaaatcctacgcacc
aacctcgcggcggttattctgcaactggctaccatgtggacagcggacattgaaggcttc
ccctttgtcgaaccgccggatactcgcctgattcgtgacggctacaaactgctgtttgaa
atcggcgcggtcgataaaaacttcaacgtcaccagcagtgggcatcaactcgccaaactg
ccactcgacccccgctttgggcgcatgttactggcagcaaacgataatggggcattgcgc
gaagtattgatcattgtcagtgccttaaccctgcaagacccgcgtgaacgcccactggat
aaacaacaagcacctgatgaaaaacatgcacgtttcaaggatgagcaatccgatttcctc
agcttcctcaaattgtgggattatttccacgagcaacgcaaacacctatcccaacgcaaa
ttccgcgaactgtgccagaaagaattcctctcctacatgcgcctgcgcgaatggcacgac
attcacacccaattgcatcaaatggtgctggaaatgggcggcaaggaaaatgacgctcca
gccagttacgacgcgatccacctgagtttgctgaccgggttgctgggcaatatcggcatg
aaggacgaagagcgcgaatacatgggcgcgggtgggcgtaaattccacattttccccgcc
tcccatttacgcaaaaaaccgccgcaatgggtcatggcagcggaattggtggaaacatcg
cgcttattcgggcgcaccattgccaaaattcaacccgaatgggtggaaaaactcgccgaa
cacttgctgcgccaccattacaccgaaccgcattgggagcaaaaacaagcacaagttgcc
gcgtttgaacgcacctcgctctacggcatcaccatcaccccacgccgcaaagtcagctac
gggcgcattgatcctgtcacctgtcgcgaaatctttattcgtcacgctttggtatacggc
gaataccgcacggccgcgccatttttccaacacaatgccgaactgattgctgacattgaa
atgttggaagcgaaggctcgccgccgcgacattctcaccgacgaacaccgtttgtatgcg
ttttatgacgaacgccttcccgcccatatcgtcaatgggcattctttcgagcgctggcgc
aaaaaagccgagcagcacgacagccaattgctgtacctcacccatgcttacctgatgcag
cgtgacgcagggcatgaaaaaagtgggcaattccccgacagcttgcaggtgcaaggcatg
attctgccgttacgctaccactttgatccgaaagccgaagatgatggtgtcacggtacgt
ttacccttgctggggctaaatcaactcaaccccatccgcttcgagtacttagtgccgggc
atgttggaagaaaaaatcaccgcgctgattcgtgctttacccaaacacattcgcaaacag
tttgtacccgcaccggattacgcccgtgcctgcatggaagccatcgaacctagtgacacc
ttgcccttgcaaacatcggtggaaaaacagctattacgcatgagtggcagccaaattcca
cccgaagcgtgggcagccattacgctggaaacacacttgcaaatgcgctttgaagtcgcc
gatgaagcgggtaaagtgattcgcagcggacgtgatttagacaccttacgcggcaaagtg
cacgcgcaaacccgcgcggaattggcatccaaacccgtgcaatccatcgaacgggtcggc
attaccacatgggattttggtgatttaccggaactctattggctggaagcaggtggcatg
aaattgcgcacatggcctgccctagtcgatgccaacaacagtgtcagcattcgcttgttt
gataatgaagccgatgccagcaacgcccattggcaaggcgtattgcgcctgttctggctc
gctttgcccgctgaagtgaaagacgtgccgaaatatgtgccgcaaatgcagaccttgtgc
ctgcactacgccgccactggcaaatgcgaggaactcaaagacagcatcacccgctacgtg
ttccggcaagcatttaaaaatcacctgagcatccgcaagcaggacagctttacccacgca
ctgggtgaatgccgttcacagatttttccgcaaacccaagaaacagcgcgtctgctgacc
ccgatactcgcgctttaccatgacttgcgcaaacaattaaaaggcaaagtgcaaccggca
tggttagaagccctgaatgacatcagcgaacaattgaaccatctggtgtatgtaggattt
ctggacgcagtatccccagaggagttacggcactttccgcgttacctcaaaggcattcaa
cgacgtttgcaaaaattggcagagaacccgaccaaagacagggcattacgggtgcaagta
caaccgtattgggatcagtggaaagcggcttcgactacgctcagccagcggcgttccctg
agcgaagtcgaagggaactggcacgagtaccgctggatgttggaagaattccgggtatcg
ctatttgcgcaggagctaggaaccgcaaggccagtatcagccaagcggttagatgaatta
tggaaaaaagcccagccgtag
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