Thiothrix winogradskyi: L2Y54_03335
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Entry
L2Y54_03335 CDS
T08347
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
twn
Thiothrix winogradskyi
Brite
KEGG Orthology (KO) [BR:
twn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
twn03016
]
L2Y54_03335
Enzymes [BR:
twn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L2Y54_03335
Transfer RNA biogenesis [BR:
twn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L2Y54_03335
Prokaryotic type
tRNA splicing ligases
L2Y54_03335
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UJS25082
UniProt:
A0ABY3SZX0
LinkDB
All DBs
Position
617913..619115
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AA seq
400 aa
AA seq
DB search
MPISFMLNKGKVPVKIFTDDVDSGSLTQLGNLSQLPFIHSHIAAMPDVHHGIGATVGSVI
PTRGAIIPAAVGVDIGCGMNAVRLSLKAHNLPDNLYSIRSAIEQRVPTGFDEHERPSING
STLNNMGKHLDVITDKHPGLVKMLKNFHRQWGKQLGTLGGGNHFIELCIDESDDVWVMLH
SGSRGVGNAIGRYFIEKAKKDVGRELGQLPDKDLAYFTEGTKHFDDYVEAVGWAQDYAMV
NRREMMRLVLDALQRSKALPAFTTTREAINCHHNYVQKEEHFGAEVYLTRKGAISAQLGQ
LGIIPGSMGAKSYIVRGLGNAQSFCSCSHGAGRRMSRTEAKRRFNTLDLEAQTKGIECRK
DKGVVDEIPGAYKDIDVVMQNQSDLVEVVHTLRQVICVKG
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcagttttatgctcaataagggcaaggttccggtcaagatttttactgacgat
gtggatagcggttcgctgacacaattgggaaatctgtcgcaactgcccttcatccacagc
cacattgcggcgatgccagacgtgcatcacggcattggtgcgaccgtgggttcggtgatt
cccacccgtggcgcgattattcccgctgccgtcggcgtggatattggttgtggaatgaat
gcggtacggttatcgctcaaagctcacaacttgcctgacaacttgtacagcattcgcagc
gcgattgaacagcgcgtgccaaccggttttgatgaacacgaacgccccagcatcaacggt
tcgaccctcaataacatgggtaagcacctcgatgtgattaccgacaagcaccccggactg
gtgaaaatgttgaaaaactttcaccgccaatggggcaagcaactcggcacactcggcggc
ggcaaccattttatcgagttgtgcatcgacgaaagtgacgacgtgtgggtgatgctgcat
tccggcagtcgcggggtcggcaatgccatcgggcgttatttcatcgaaaaagccaaaaag
gatgtcgggcgggaacttggtcaattgccggacaaagacctagcctatttcaccgaaggc
acaaagcattttgacgattacgtggaagcggtcggttgggcgcaggattacgccatggtc
aatcgccgcgaaatgatgcgcttggtattggatgcgttgcaacgcagcaaagccttgcct
gccttcaccactacccgcgaggcgatcaattgccaccacaattacgtgcaaaaggaagag
cacttcggtgcagaggtctacctgacccgcaagggcgcaatcagtgcgcaactggggcag
cttggcattattcccggcagcatgggtgcgaaatcctacatcgtgcgcggcttgggcaat
gcgcaatcgttctgctcgtgttcgcacggtgcagggcgacgcatgagccgcaccgaagcc
aaacggcgtttcaacaccctcgatctggaagcgcagaccaagggcatcgaatgccgcaag
gacaaaggcgtggtcgatgaaattcccggcgcgtacaaggacatcgacgtggtgatgcag
aaccaaagcgatctggtcgaggtcgtacatacattgcgtcaagtgatttgcgtgaaaggc
taa
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