Thiothrix winogradskyi: L2Y54_12125
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Entry
L2Y54_12125 CDS
T08347
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
twn
Thiothrix winogradskyi
Pathway
twn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
twn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L2Y54_12125 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twn03400
]
L2Y54_12125 (mfd)
Enzymes [BR:
twn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L2Y54_12125 (mfd)
DNA repair and recombination proteins [BR:
twn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L2Y54_12125 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
AAA_30
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
UJS22693
LinkDB
All DBs
Position
complement(2362961..2366548)
Genome browser
AA seq
1195 aa
AA seq
DB search
MPALLKPHFPTSSNGHVRWRQLYGASLDWLIAQAAQGFDGLLLLAVPDVHTAYQMDSALH
FFAPEIPRHIFPDWETLPYDVFSPHEDIISERLKTLATLQNLKRGILLVPATTLLHRVAP
TSYVHGHTFVVRKGSPLNIDKLRKQLEEAGYRNVSQVMAHGEYATRGSLVDLFPMGSHTP
YRIDLFDEEIDSIRTFNPETQRTEDVVNSIELLPAREFPLDEAGIRTFRQNYRAQVEGDL
SRSRIYEGVSQGKPPAGIEYYLPLFFEHTATLFDYLPKKTLLVLAEGVDAAVKTFWETVE
YRYEQRRHDVERPLLAPEKLFLTAAMLQSWVGDYPRIEVQRFKETPPGLPLSGEEKEAPL
SSPSPDKGRLGGVSSINYPIAALPSLLIHARQEQPLFLLFNFLKDLQGRVLFTAESAGRR
EALMTLLREQFVGLKSDLQDDASRRSDFSPTSPLKVLETWQDFLGSKAEMAVTVAPLENG
FWLPDAKIAIIPENLLHGVQIQQQRRRRKATRDADAIIRNLTDLNEGAPVVHEEHGVGRY
LGLETVTAGGVTAEYLLIEYANHDKLYVPVAALHLVSRYTGADPEHAPLHRLGNEQWDKA
RQKAAEKARDVAAELLDIHARRAAQQGHSFPFDDNDYRLFAGAFPFEETPDQALAIENVI
KDMRSAQPMDRVVCGDVGFGKTEVAMRAAFVAANAGKQVAMIAPTTLLAQQHLNNFRDRF
ADWPFNIESLSRFKTGKETSKALEALASGKIDIVIGTHKLLQDDVHFKQLGLVIIDEEHR
FGVRDKEQMKKLRANVDMLTMTATPIPRTLNMSLSGLRDLSIIATPPTQRHAIKTFVCEW
NKTIIQEACARELSRGGQVYVLHNEVKTIDKVEQELSAMLPGVTVRHAHGQMRAHDLESI
MSDFYHQRFQILIATTIIESGIDVPTANTILINRADKLGLAQLHQLRGRVGRSHHRAYAY
LIAPPKSALTPDAVKRLEAIESLEELGVGFTLATHDLEIRGAGELLGEGQSGQIQEIGFN
LYNDLLERAVKALKSGDVGAVREPPLRWHRNHTTVELGAPALIPDDYLQDVHARLILYKR
IASAESQAALDELRVEMIDRFGLLPEPTKTLFSVTRIKLLAQELGIRKLDMHIKGGRIIF
DDKPNIDPMKVITLIQKRPWVFKLDGQDKLRFEVELPTVEEREEWVVKLMGEIGG
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcattgctcaagccccacttccccacatcctctaacggtcacgtccgctggagg
cagttgtacggcgcatccctcgactggctgattgcccaagccgcgcaaggctttgatggt
ttgctgctgctggcagtgccggatgtgcataccgcctaccagatggattccgcattgcac
ttcttcgccccggaaattccgcgccacattttcccggattgggaaaccctgccctacgat
gtgttttcgccgcacgaagacattatttccgaacgcctgaaaacgctggcaacgctgcaa
aacttgaaacgcggcatcttgctcgtgccagccaccacgctgttacaccgggttgcaccg
accagttatgtacacgggcataccttcgtggtgcgcaaaggttcgccgctcaatatcgac
aagctacgcaagcaactcgaagaagcaggctaccgcaacgtcagtcaggtaatggcacat
ggcgaatacgcaacgcggggttcgctggtcgacttgttcccgatgggcagccatacgccc
taccggattgatttgtttgacgaggaaattgactcgatccgcacgttcaacccggaaacg
cagcgtactgaagatgtggtaaacagtattgaactgctaccagcgcgggaatttccgctg
gatgaggcggggattcgcaccttccgccagaattatcgggcgcaagttgaaggcgatctg
agccgtagccgcatttacgaaggcgtgagtcagggcaagccaccagcggggattgaatat
tacttgccgctgttctttgagcataccgcgacgttatttgattacttgccgaagaagacg
ctgctggtactcgctgagggtgtggatgctgccgtcaaaacgttctgggagacggtggag
tatcgctatgagcagcggcggcatgatgtggaaagaccgttgcttgcgccggagaagttg
tttttgacggcggcgatgctgcaaagctgggtgggggattatccacggattgaggttcaa
agatttaaagaaacccctcccggcctccccttatcaggggaggagaaagaagctcccctc
tccagtccctcccctgataaggggaggttaggaggggtttcttcgatcaactaccccatc
gctgctctgccctcgctcctcatccacgcccgccaagaacagcccctgttcctgctgttc
aacttcctcaaagacctgcaagggcgcgtattattcaccgccgaatctgccgggcgacga
gaagccttgatgacgttattgcgggagcagtttgtcggactaaagtccgacctacaagat
gacgcttcccgtaggtcggactttagtccgacatcccctctcaaagtcctagaaacctgg
caggatttcctcggtagcaaagcggaaatggcggtcacggtcgcgccgctggaaaatggt
ttctggctgcccgatgcgaagatagcgatcatccccgaaaacctgctgcacggcgtgcaa
atccagcagcaacgccgtcgccgcaaagccacccgcgatgccgatgccattatccgcaac
ctcaccgacctcaacgaaggcgcacccgtagtccatgaggaacacggggtcgggcggtat
ctggggttggaaacggtcacggcgggcggggtgacggcggaatatttgctgatcgaatac
gccaaccacgacaagctgtacgtccccgttgccgcgctgcatctggtcagccgttacacc
ggggctgaccccgaacacgcgcccttgcaccgcctcggcaatgagcagtgggacaaagcg
cggcaaaaagcggcggaaaaggcgcgggatgtggctgcggaattgctcgacatccacgcc
cggcgtgccgcgcaacaggggcacagcttcccgtttgacgacaacgattaccgcctgttt
gcaggcgcgttcccgtttgaggaaacgccggatcaggcattggcgattgaaaacgtgatc
aaggacatgcgttccgcgcaaccgatggatcgggtggtgtgcggtgatgtgggtttcggc
aagaccgaagtggcgatgcgggcagcgttcgtggcggcaaatgcgggcaagcaggtggcg
atgattgcgccgaccaccttgctagcgcagcagcatttgaacaatttccgtgaccgtttt
gccgattggccgttcaatatcgaatcgctgtcacgcttcaagaccggcaaggaaaccagc
aaggcactggaggcactcgcgtccggcaagatcgacatcgtgatcggcacgcacaagctg
ttgcaggacgatgtacatttcaagcaactggggctggtgattatcgacgaggaacaccgc
ttcggggtgcgcgacaaggagcagatgaaaaagctgcgtgccaatgtcgatatgttgacc
atgaccgccacgccgattccgcgcacgctgaacatgtcgctgtcgggcttgcgcgatttg
tcgatcattgctaccccgccgacccaacgccacgcgatcaaaacctttgtgtgcgagtgg
aacaagaccattattcaggaggcgtgtgcgcgggagttgtcacgcggcgggcaggtgtac
gtgctgcacaatgaggtcaaaaccatcgacaaagtggagcaggaactgagcgcgatgttg
cccggtgtgacggtgcgccatgcccacgggcagatgcgggcgcacgatctggaaagcatc
atgagcgacttttaccaccagcgtttccagattctgattgccaccaccatcattgaaagc
ggcatcgacgtgccgaccgccaacacgatcctgatcaaccgtgccgacaagctggggctg
gcacaattgcaccagttgcgcgggcgggtcgggcgttcgcaccaccgcgcttacgcctat
ttgattgcgccgccgaaatccgcgctcacgccggatgcagtcaagcggttggaagcgatt
gaatcgctggaagaactgggggtcggtttcacgctggcgacgcacgatctggagattcgc
ggcgcgggcgaattgctcggcgaagggcaaagcgggcagattcaggagatcggtttcaac
ctctacaacgacctgctagaacgggcggtgaaggcgttgaaatccggtgatgtaggggcg
gttcgcgaaccgcccttacggtggcatcgtaaccatactaccgtggaattaggtgcgcct
gcgctgatcccggacgactatttgcaggatgtccatgcgcggctgatcctctacaaacgc
attgccagcgcggaatcgcaggcggcactggacgaattgcgggtggaaatgatcgaccgc
ttcgggctgctgccagagccgaccaagacgctgttcagcgtcacgcggatcaagttgctg
gcgcaggaactgggcatccgcaagctggatatgcacatcaagggcgggcggattatcttc
gacgacaagccgaatattgacccgatgaaggtgattaccctgatccagaaacgcccgtgg
gtgtttaagctggatgggcaggataaattgcggtttgaggtggaattgccgacggtggag
gaacgggaggagtgggtggttaagttgatgggggagattggggggtaa
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