Thiothrix winogradskyi: L2Y54_13195
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Entry
L2Y54_13195 CDS
T08347
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
twn
Thiothrix winogradskyi
Pathway
twn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2Y54_13195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twn03019
]
L2Y54_13195
Enzymes [BR:
twn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L2Y54_13195
Messenger RNA biogenesis [BR:
twn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L2Y54_13195
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_22
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UJS22895
LinkDB
All DBs
Position
2584991..2586337
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AA seq
448 aa
AA seq
DB search
MLFSELGLSEPLLRAISEQGYDTPTPIQAQGIPAVLSGRDIMAAAQTGTGKTAGFTLPML
HRLSANGNQPKSNHIRALVLTPTRELAAQVGESVRDYGKHLPLTSTVVFGGVSANPQMMA
LRRGLDILVATPGRLLDLYDQNAVKFSQVEMLVLDEADRMLDMGFIRDIRKILALLPKRR
QTLMFSATFSDDIVALTKGLLVDPVQISVSPRNAAAATVTQSVYLVDKARKTALLSHLIR
ENQWEQVLVFSRTKHGANRLAEKLERDGVTAAAIHGNKSQGARTKALADFKQGNIRVLVA
TDIAARGLDIEQLPHVINFELPNVSEDYVHRIGRTGRAGATGEAISLVEPEEYGFLKGIE
KLIKQQLPREPLPTISVAPTRALTAAEIANDAEADRPRPAQHRPANRRTKSQKTETRKVA
GLPPVKKPEGAAASKPRRRRPNKPQAVA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgctattttctgaactcggcttgtccgagccgctgttgcgtgccatcagcgaacagggt
tatgacaccccaacccctatccaagcacaaggcattcctgccgtcctttctgggcgcgac
attatggcagcggcgcaaacgggcacgggtaaaaccgctggtttcacgttgccgatgctg
caccgtttatcggcgaatggtaatcagccaaaatctaaccacattcgtgccttagtgctg
accccgacccgcgaattggcggctcaggtcggcgaaagtgtgcgcgattacggtaaacat
ttgccgttaacctctaccgtcgtgttcgggggcgtgagtgctaacccgcaaatgatggcg
ttacgccgtggtttggacattctggtggcaacaccggggcgtttactggacttatacgac
cagaacgccgtgaaattttctcaagtggaaatgctggtgctagacgaagcggatcgcatg
ttggacatggggttcatccgcgacattcgcaaaattctggcgttgttgccgaaacgtcgc
caaaccttgatgttttccgcgacgttttctgacgacatcgtggcactgaccaaaggtctg
ctggttgacccggtgcaaatctcggttagcccacgcaatgcagcggcggctaccgtgacg
caatcggtttatttggtggataaagcgcgtaaaactgccttgctgagccatttgatccgt
gaaaatcagtgggaacaggtgttggtattttcgcgcaccaaacacggtgctaaccgtttg
gcggaaaagctggaacgtgatggtgtaaccgctgcggcaatccacggcaacaaaagccaa
ggtgcacgcaccaaagcattggcagatttcaagcaaggcaatattcgcgtgctggtagcg
actgacatcgccgctcgtggcttggatattgagcaattgccacacgttatcaatttcgag
ttgccgaacgtgtcggaagattacgtgcatcgcattggacgtaccgggcgggcaggggcg
acgggtgaagcgatttccttggtcgaaccggaagaatacggtttcctcaaaggcattgaa
aagctcattaagcagcaattgccgcgtgaaccgctgccaacgatcagtgttgcgccgacc
cgtgcgttgacggctgccgagattgccaacgatgcggaagcggatcgtccgcgccctgcc
cagcatcgccccgcgaatcgccgtaccaagtcgcaaaaaacggaaacacgcaaagtcgct
ggtttgccaccggtgaaaaaaccggaaggtgcagcagcgagcaagccgcgtcggcgtcgc
ccgaataagccgcaagcggtggcgtaa
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