Thiothrix winogradskyi: L2Y54_18830
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Entry
L2Y54_18830 CDS
T08347
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
twn
Thiothrix winogradskyi
Pathway
twn03030
DNA replication
twn03430
Mismatch repair
twn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
twn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L2Y54_18830 (dnaE)
03430 Mismatch repair
L2Y54_18830 (dnaE)
03440 Homologous recombination
L2Y54_18830 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
twn03032
]
L2Y54_18830 (dnaE)
03400 DNA repair and recombination proteins [BR:
twn03400
]
L2Y54_18830 (dnaE)
Enzymes [BR:
twn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L2Y54_18830 (dnaE)
DNA replication proteins [BR:
twn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L2Y54_18830 (dnaE)
DNA repair and recombination proteins [BR:
twn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L2Y54_18830 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
UJS23968
UniProt:
A0ABY3SX18
LinkDB
All DBs
Position
complement(3798673..3802203)
Genome browser
AA seq
1176 aa
AA seq
DB search
MTPFVHLRLHTEYSLVDSTIRIKPLMKVAASKDLPALAITDQNNFFGLVKFYKAAMGAGI
KPIFGLDLLLADEQGTDTLFHTILLCQNNTGYRNLTKLVSRAYQQGQVLGVPRVQREWIK
EFSDGVIMLSGGREGDIGQALLSGNQELADKRLQEWLETFPDRYYLELQRTGRDGEEDYI
HAAIDLALAHDIPVVATNDVRFTAESDFASHEARVCIRDGYVLADPKRPKRYSPQQYLRT
GDEMEELFADIPSAISNTVEIAKRCNVSLTLGKNYLPQFPIPDGLTEAQYFCQVSEKGLE
ERLDFLLGERFPRGTPAFIEKRKVYDERLKIELDVINEMGFPGYFLIVADFIQWAKDNAI
PVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDIDFCMDGRDKVID
YVARTYGRNQVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFTIGITLEDALG
RTPKSEKDSELVSPDLIDLYNKDEEVKSLMDLAISLEGLSRNTGKHAGGVLISPTDLTDF
TAICCEENGEGVVSQFDKNDVEDIGLVKFDFLGLRNLTIIDWALQTINRKQAAKGLPSVD
INRIPLDDKASFDLLKAQKTTAVFQLESRGMKDLIRRLQPDVFEDVVALVALFRPGPLQS
GMVDDFINRKKGIAKVEYPHPSLEQILKPTYGVIVYQEQVMQIAQVLAQYTLGGADMLRR
AMGKKKPEEMAKQRSIFMEGARNNNVDENQAGYIFDLMEKFAEYGFNKSHSAAYALVAFQ
TAWLKAHHPAAFMAAVMSADMDNTEKVVTLLDDCRQLSLQVLPPDINRSEYQFTVDDQNR
IIYGLGAVKGAGEAALSVLVEQRNKEGAFKSLAELCKRAGTQKVNRRVLETLIKSGAFDS
LGGTRRAMLEYLPEAMRMAEQYNRNQGTGQTDLFGGLFGGGVAESTPEATMPEREEFPEK
ERLRLEKETLGLYLTGHPLDEYQSEIAGLGSRKKLVDIAEDDSTKYRREPVMLAGLVASV
RTQHTDNGKRAFVQLDDNTAYYEVMIFTDTFTQYGNLLEKEACIVLEGTLDTDQRTGKTR
LRVEKVHNMQSVRENFLRKLVLRLEEKQVEQGILPALRQRLKPAATAGSFPITLEYRNAK
ACADLRLAGSWTVPLDDAGVRDLRQLLGKENVSLVF
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaccccattcgtccacctccgcctccacaccgaatactcgctggtcgacagcaccatc
cgcatcaaaccgctgatgaaagttgccgcgagcaaagacttacccgccctcgccattacc
gaccaaaacaactttttcggtttggtaaaattctacaaagccgcgatgggcgcaggcatc
aaacccatcttcggcctcgacttgctgctggcagacgaacaaggcacggataccttgttt
cacacgattttgctgtgccaaaacaacaccggctaccgtaacctcaccaagctcgtatcc
cgcgcttaccaacaagggcaagtgctgggcgtaccgcgtgtacaacgcgagtggatcaag
gaattcagcgacggcgtaatcatgctctctggcggacgcgagggtgatataggtcaagcc
ttgctctccggcaatcaagaactcgccgacaaacgcttgcaagaatggctagaaaccttc
cccgaccgctactatttagagctgcaacgcaccggacgcgatggcgaagaagactacatc
catgccgccatcgacctcgcccttgcacacgacatccccgtggtcgccaccaacgacgtg
cgtttcaccgccgaatccgattttgcttcccacgaagcgcgggtctgcatccgtgacggc
tacgtgctggctgaccccaaacgcccgaaacgttacagcccgcagcaatatttgcgcacg
ggcgacgaaatggaggaactgttcgccgacattcccagcgccatcagcaacacggtggaa
atcgccaaacgctgcaatgtgtcgctgaccttgggcaaaaactacctgccgcaattcccg
attcccgacggacttaccgaagcccaatacttttgccaagtcagcgaaaaaggcttggaa
gaacgcctcgatttcctgctcggcgagcggtttccacgcggtacgcctgctttcatcgaa
aagcgcaaagtgtacgacgaacgcctgaaaatcgaactcgacgttatcaacgaaatgggt
ttccctggctactttctgatcgttgcggactttattcagtgggcaaaagataacgctatt
cccgtaggccctgggcggggttcaggtgcaggttcactggtggcgtatgcgctgaaaatc
accgaccttgacccgctggcttacgacttgctgtttgaacgcttcctcaaccctgaacgg
gtgtcgatgcctgactttgacatcgacttctgcatggatgggcgcgacaaagtgattgat
tatgttgccagaacttacgggcgcaatcaggtttcgcaaatcatcacttacggatcaatg
gcagcgaaagccgtggtgcgcgatgtagggcgggtgttgggtcatccctacgggttcgtg
gatcggattgccaaactgattccgtttactatcggtatcaccttggaagacgcgctgggg
cgtacccccaagtccgaaaaagattccgaattggtatcccccgatctgatcgacttgtat
aacaaggatgaagaagttaagtcgttgatggatttggcgatttcactggaaggtttgtcg
cgcaacaccggtaaacacgcgggtggggtcttgatttccccgaccgatttgaccgatttc
accgcgatttgctgcgaagaaaacggcgaaggcgtggtgtcacaattcgataaaaatgac
gtggaagacatcgggctggtcaagttcgactttttgggcttgcgcaacctcaccatcatc
gactgggcgttgcaaaccattaaccgcaaacaagcggcgaaaggtttgccgtcggtggat
attaaccgcattccgttggacgacaaagccagctttgatctgctcaaggcgcaaaaaacc
accgccgtattccagcttgaatcacgcggcatgaaagacctgattcgtcgcttgcaaccc
gacgtgttcgaggatgtggtggcattggtggcattgtttcgcccaggtcccttgcaatcg
gggatggtggacgatttcatcaaccgtaaaaaaggcattgctaaggtcgaatacccgcat
ccgagcctagagcaaattctcaagccgacctacggcgttatcgtttaccaagaacaggtt
atgcagattgcgcaagtgcttgcccagtacacgctgggtggtgcggacatgttgcgccgt
gcaatgggcaaaaagaaaccagaagagatggcaaaacagcgttccatctttatggagggg
gcgcgtaacaataacgtcgatgaaaatcaggctggctatatatttgatttaatggagaaa
ttcgcggaatatggtttcaacaagtcccattcagccgcctacgcccttgtcgccttccaa
accgcatggctaaaagcccatcaccccgccgcgttcatggcagcggtcatgtcagcggat
atggataacaccgaaaaagtcgtgaccttgctggatgattgccgtcaattgagtttgcag
gtgttgccgccggacattaatcgttccgaataccaattcacggtggatgaccaaaaccgc
attatctatgggctgggtgctgtgaaaggcgcgggtgaagctgctttgagtgtattggtg
gaacaacgcaataaagaaggggcatttaaatcactggcggaactctgcaaacgtgctggc
acacaaaaggtcaatcgtcgcgtgctggaaaccttgatcaaatccggcgctttcgacagc
ctgggtgggacgcgccgcgccatgctcgaatacctgcccgaagccatgcgcatggcagaa
caatacaaccgcaatcaaggcacggggcaaaccgacctgttcggcggattatttggcggc
ggtgtggcagaatccacacccgaagcgaccatgccagaacgcgaggaatttcctgaaaaa
gaacggttgcgtttggaaaaagaaacgctggggctgtatctcaccgggcatccgctcgat
gaataccagtcggaaattgccggtttaggcagccgcaaaaagctggtggatattgccgaa
gatgacagcaccaaataccgccgtgagccagtgatgttagcgggattggtcgctagtgtg
cgcacgcaacacaccgataatggcaaacgcgcgtttgtgcaattggacgacaataccgct
tattacgaggtgatgattttcaccgatacctttacccagtacggcaatttgttggaaaaa
gaggcttgtattgtgttggaaggcacgctcgataccgatcagcgcacgggcaagactcgg
ctgcgcgtcgaaaaagttcacaatatgcaatccgtgcgcgaaaacttcctgcgcaaattg
gtgttgcggctcgaagaaaaacaggtggaacaaggcatattacccgccttgcgccaacgc
ctgaaaccagcagcaacagcgggaagttttccgattacgcttgaataccgtaacgctaaa
gcctgcgccgatctgcgtttggcaggttcgtggacagtgccgctagacgatgccggggta
cgtgacctccggcagctattgggtaaggaaaatgtcagtttggtgttttaa
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