Tropheryma whipplei TW08/27: TW082
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Entry
TW082 CDS
T00117
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tws
Tropheryma whipplei TW08/27
Pathway
tws03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tws00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TW082 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tws03021
]
TW082 (rpoC)
03400 DNA repair and recombination proteins [BR:
tws03400
]
TW082 (rpoC)
Enzymes [BR:
tws01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TW082 (rpoC)
Transcription machinery [BR:
tws03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TW082 (rpoC)
DNA repair and recombination proteins [BR:
tws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TW082 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ADDB_N
DUF4455
DUF7201
Motif
Other DBs
NCBI-ProteinID:
CAD66767
UniProt:
Q820D9
LinkDB
All DBs
Position
77472..81299
Genome browser
AA seq
1275 aa
AA seq
DB search
MATTEDIRRWSYGVVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECGCGKYKRSRYRGV
VCERCGVEVTQSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDIAPKDLDKVIYFAA
YMVVSLDEEGRKEDLQDLENELRLDIKQLRDACDASIASAVSELERTITELQDAKTSASR
INKVRSEAENKMANIRREYDDKIEHLERVWDSFKALKVGGLYAEDDVFRDVQDRYGDYFD
ACMGAEAIKRRLEDFDLQKTAQELGVQIVECRGQRKVRAIKRLRVVNSFITSKANPACMV
LDVIPVIPPELRPMVQLDAGRFAASDLNDLYRRVINRNNRLKRLLDLGAPRIIVNNEKRM
LQEAVDALFDNGRRGRPVSGTNNRTLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVG
PTLQLHQCGLPKLMALELFKPFIVKRLLDLALAPNIRSARRMIERGDPAVWDMLDAVIKA
RPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQMAVHLPLSLEAQA
EARVLMLASNNILNPSDGRPVTLPSHDMIIGLYHLTTVKPSAKGAGRAFSSVAEAIMAKD
RGDLSISAPVKILFSNIVLDGKTLDSAVVETTLGRAIFNEALPDGHPYINELVDKQVISS
IINNLAEVYSKVEVANTLDKIKSVGFHWATRSGVTVAISDVVSPPEKQEIISKYETQARG
VQQDFEIGLLTDLERRQALVSIWSEATDRVAEAMRKCFPDDNTINTMVTSGARGNWLQVR
NIAGMRGLVANPKGETIPRPIISSYREGLSVTEYFISTHGARKGLVDTALKTADSGYLTR
RLVDVAQDVVVRERDCGFTRGVRMPVTFRGDDGELHKVENAEHSVYGRTLAEDVKTPDDN
LIAKAGEDISGIMIDSFIAAGVESVEVRSVLTCRSKVGVCSACYGRSLATGARVDIGDAV
GIVAAQSIGEPGTQLTMRTFHSGGSASAVDITQGLPRVQELFEARTPRAAAPIAEADGTV
SIEDGDRARRLILKSDNNEEFSYTVLKRAQLRVKDGSRVSLGDQLVEGSLDPKEVLRVKG
IRAVQEYLVNGVQQVYRSQGVPIHNKHIEVIVRQMLRKVTVVDHGDTSMLPGELIDQSRY
QELNREAQAEGRKTASARQEVTGITKASLATESWLSAASFQETTRVLTQAVISGRRDPLI
GLKENVIIGNLIPAGTGLSVYRDVEPEPRPEAISRMYPTRRPEIENLLEGDSVDPEFDFS
SLTQGLELPDDYPVQ
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggccacgactgaagatattcgtcgttggtcatatggcgttgtaaaaaagccggagact
ataaactacagaaccctaaagcccgagaaagatggcttgtttggcgagcagattttcggt
ccgacgcgggattgggagtgtggatgcggtaagtacaagcgcagtcgatacagaggcgtt
gtatgtgaacgctgtggggttgaagttacccagtcttccgttagacgcgagcgtatgggg
catatagagcttgcggcccctgtgacccatatctggtatttcaaaggcgttccgagtcgg
ttgggttatttgttggatattgcgccaaaagaccttgacaaggttatatacttcgctgct
tatatggttgtttctttggacgaggaaggtcgcaaggaggatctgcaggatctggagaat
gagcttcgcctggatataaagcaattgcgcgatgcttgtgatgcaagtatcgcatccgct
gtttctgaactcgagagaacaataactgagctgcaggatgcaaagacctccgcttcccgt
attaacaaagtccgcagtgaggcggagaacaagatggctaatatccgccgtgaatatgac
gataaaatcgaacaccttgagagggtttgggacagtttcaaagctctcaaagttggcggc
ctatatgctgaggatgatgtttttcgtgatgtgcaagatcgctatggtgattattttgat
gcatgtatgggcgcagaggcgattaagcgtcgccttgaagacttcgatctacagaaaaca
gctcaggaacttggtgttcagattgttgagtgtcgtggccagcgtaaggtgcgcgccata
aagcgtcttagggttgtcaattcgtttattacctctaaggcaaatccagcatgcatggtc
cttgatgtaatacctgttattccccctgaactgaggcctatggttcagcttgatgctggc
cgatttgccgcatctgatctgaatgatctttatcggcgggttatcaaccgtaacaacaga
ctaaagagactcttggatcttggtgcgccgcgtattattgtcaacaatgaaaagcgaatg
ctgcaggaggctgttgatgcgctttttgacaatggccgccgtggtagaccagtcagtggg
actaataacaggactttaaaatccctttctgacatgctcaaaggaaaatccgggcgattt
cgtcagaatttgcttggaaagcgcgttgattattcaggtcgttcggttatcgttgttggt
cctacccttcagctccatcaatgcgggttgcccaagcttatggcgctggaattgtttaag
ccctttattgtcaagcggcttttagatcttgccttagctcccaatatacggtctgcgaga
cggatgattgagcgtggcgatccggctgtatgggatatgctggatgctgttataaaggcg
aggcctgttttactcaacagggctccgaccttgcacaggctcggtatccaggcttttgaa
cctcagctcgttgaaggcaaagcgattcagttgcatccgcttgtgtgtgctgcttttaat
gctgattttgatggagaccaaatggcggtgcacttaccgctctctcttgaagcccaggcc
gaggcgcgtgttttaatgctcgcctcgaataatatcttgaatccttcagatggtcgaccc
gtaaccctaccgagtcatgacatgatcattgggttgtatcatctgacaaccgtgaaacct
tctgctaagggtgctggtcgcgcattctcttcggtcgccgaggctattatggcaaaggac
cggggcgacctgtcaatcagtgctcctgtaaagattcttttttccaatattgtattagac
ggaaaaacgcttgattcggcagttgttgaaacaactttgggtcgtgctattttcaatgaa
gctctgcccgatgggcacccttacatcaatgaattagttgataagcaagtaatttcgtcg
attattaataacctggccgaggtctattcaaaggtcgaggtggcgaacactctggacaaa
ataaagagtgtgggatttcattgggcgacccgttctggtgttactgttgcaatttccgat
gtcgtgtcaccgcccgaaaagcaggagataatttctaagtacgagacgcaggccaggggt
gttcaacaggattttgagataggccttctaactgacctagaaaggcgacaggccctggtt
tccatttggtctgaggcaacagatcgtgtcgcggaagcgatgcgtaagtgttttccggac
gataatacgatcaatactatggttacttcaggagctaggggcaactggcttcaagtacgc
aacattgcgggtatgcgtggcttagttgcaaacccaaaaggtgagacaattccgaggcct
attatttcttcttatcgcgaggggctttctgttaccgagtatttcatttctacgcacggt
gctcgtaaaggtcttgttgacactgccctaaaaacggccgattctggttatctgacaaga
cgcttggttgacgtggctcaggatgttgttgttcgcgagcgcgactgcggctttacacgg
ggtgttcgcatgccagttacattccgcggtgatgatggtgaacttcataaggtggagaat
gcggaacattcggtttacggcagaacccttgctgaggatgtaaaaactccggatgacaat
cttattgcaaaggccggagaagatataagtggcatcatgatcgacagtttcatcgctgcc
ggtgttgagtctgttgaagtcaggtctgttctgacatgtcgatccaaagttggggtctgc
tccgcctgctatggtcgctctcttgcaacgggtgctcgtgtcgatataggtgacgcggtt
ggaattgttgccgcccagtccattggtgagcctggcactcagctcacaatgcgtacattc
cacagtggtggttcggcatctgctgttgatatcactcagggccttcctagggttcaggag
ctttttgaagcgagaacacccagggctgcagctcctattgccgaggcagatgggactgtg
tccattgaagatggtgatagagcgcgccggcttattcttaagtctgataacaacgaagag
tttagttacactgttctaaagcgcgcgcagctccgcgttaaagacggcagtcgcgtttca
ctcggtgatcaattggtcgagggttcattggatccaaaggaagttttgcgagtcaagggc
attcgtgcagttcaggagtacctcgtaaatggggttcagcaggtgtatcgctcacagggt
gttcctattcacaataagcatattgaggttattgtgcgccagatgctgcgcaaggttacc
gtcgttgatcacggcgacacgtctatgttacccggtgaacttattgatcagtctcgatat
caggagctaaatcgcgaggcgcaagcggagggacgtaaaaccgcttcagcccgtcaagag
gttaccggcattaccaaggccagcttggctaccgagtcttggttgtccgccgcctccttc
caggagactactcgtgttttaactcaggccgttatttctggaagaagagatcctctgatt
ggcttaaaagagaatgttattataggaaaccttatcccggctggcactggcttgtccgtc
tatcgtgatgttgagccggagcctagacctgaggctatttcccggatgtacccgactcga
cgtccagaaatcgaaaaccttttggaaggtgactctgttgatccagagtttgatttttct
tctctaacacaaggccttgaattgcccgatgactatcccgtacagtaa
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