Tropheryma whipplei TW08/27: TW243
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Entry
TW243 CDS
T00117
Name
(GenBank) putative ATP-dependent DNA helicase subunit
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tws
Tropheryma whipplei TW08/27
Pathway
tws03420
Nucleotide excision repair
tws03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tws00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TW243
03430 Mismatch repair
TW243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tws03400
]
TW243
Enzymes [BR:
tws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TW243
DNA repair and recombination proteins [BR:
tws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TW243
MMR (mismatch excision repair)
Other MMR factors
TW243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
PhoH
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAD66919
LinkDB
All DBs
Position
267878..270799
Genome browser
AA seq
973 aa
AA seq
DB search
MNMSLRDSRHMCSILNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASG
KLKPESIMGLTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVLTYNSFANSIYQDNA
LLLDHPVPYTAIEDSEAQLIARRLLVEHGLDEDEPSETIDNLASSLIKLDDAIVDNLLDL
GELNQFASEFIEFVGAFDAPVAKSDVFRAKRLIALSKLIPALKDEKKLRGRISYSEQVAF
ALEVCRQTHVLAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFGNRCRVLAVGDPRQAIFGF
RGASVANIANFARDFVSNKQYELSISWRNDKNILDLANHISPKIRPLHPRPEANDGSTSL
EVYTDPEQEVHEGALWLNSVVEKGTAAVLTRTRSRLISVSRVLDEIGVSYTRADVNIFYE
PGVVDILSCMRIISGVNENLSFLRLITGPRWQVGISDLHALRGYIAVGKKNLDRISLLEA
VNRINIQKTPMSCEGKKRLEDFLEFFRKIKGLSFLSPLELAYLIEESLNLDIEVQMSHRG
RENLDALYELIASFRGDNLSEMLAWFDSLEEEDAFRGPIKQSCPGQVELFTVHSAKGLEW
DWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRESLPEFYFHKCSDSKEYRAARRQY
EDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPGQFLREISEFLQTDLPQAVHNNP
KKRVGYWPLDSLGARRKRVKLAAAAVHNRSIEESEESLKKEPLKALIAGMLKELDISVDK
PEKRISATALSKKDPNVFLLPQPPIKNAWLGVAFHAWIENYYSTYSDMLFHENSADEYGI
SGPVFEQSQRFSPELDQLRHNFMQSEWSYKKPIAVELSLEWLIGDVIVPCTIDAVFFDGD
RYTILDWKSGLSSNQYRIQLSLYRLAFAEWKGVNPDKVEAKIYFAADNRTIKVRPYTVDE
LGKMPGFLSDLFS
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgtccctcagagacagtcgtcatatgtgcagtattctcaatctgcatgcgccg
actgaagaacagagggcaattattgaatctccactggaaaatgctcttgttattgccggc
gcaggaagtggtaaaactgaaactcttgttcttagactcttgtggcttattgcatccggc
aagctcaagcccgagtctattatgggcttaacatttaccagaaaagccgcgggcgagttg
gcatcccgcctgcagaaatcccttgcaatactcaattcttatactggtgatgtattgagt
ccagagattgatgttcttacctacaattcatttgccaattccatatatcaagataacgcc
ctgttgcttgaccatccggttccctatacagcaattgaggattctgaagcccaactaatc
gcgcgcagacttcttgtggaacatggccttgacgaggacgagccgtcagagacaattgac
aacttggcgtcaagtctcataaaacttgatgatgccatagtggacaatctactcgatttg
ggtgaattaaatcagtttgcctcagaatttatcgagtttgtaggtgcttttgatgcaccc
gttgcgaagtcagacgtattcagggccaagaggttaattgcactttcaaaacttattcca
gctttgaaagatgaaaaaaaacttcgcggcagaatcagctattccgagcaggttgcattc
gcactggaggtttgtcgccagactcatgttttggcggagtttcaggagaaaatagcttac
gttgtattagatgaatatcaggatacatcacccatccaggttgagtttctgaaaactatt
ttcggcaatagatgtcgtgttcttgcagtcggcgatccaaggcaggcaatttttggtttc
agaggcgcaagcgtggctaatattgcaaactttgcacgtgattttgtttccaacaaacag
tacgaattgtctattagttggcgaaatgacaaaaatattttggatttagcaaaccacatt
tctccgaaaataagacctttgcacccaagaccagaagcaaatgatgggtcaacttcgctt
gaggtttacactgatcccgagcaagaggtgcatgaaggcgccctgtggctcaattcggtt
gtggaaaaaggtacggctgcggttcttacacgaactagatcacgtttgatttctgtaagc
cgtgttttggacgagatcggtgtttcgtacactcgtgctgatgtgaatatattttacgag
cccggagttgttgacatcttgtcatgtatgcgaataataagcggcgtaaatgaaaatctt
tctttcttgcgtctcattacaggtccgcgttggcaggtaggaataagtgatctacacgcc
ctgcggggttatattgcggtcggtaaaaaaaacctggacagaatatcccttttggaggcg
gtaaatcgtataaatatacaaaaaacacctatgtcttgtgagggaaagaagcgcctggaa
gattttttggaattttttcgcaaaataaaaggtctttcatttttatcaccccttgagttg
gcatacctaattgaggagtccctgaaccttgatatagaggttcaaatgtcccaccgtggt
cgcgaaaacctagatgcactatacgaactgattgcgtcctttaggggagataacttaagc
gaaatgcttgcgtggttcgattcccttgaagaagaagatgccttcagaggccccataaaa
caatcctgccccggacaagtcgaattattcacagttcatagcgcaaagggccttgagtgg
gattgggttttgcttccatttttggacgactttcccgcgaagagcagagagaagagtgga
tggcttagcaagacaggcttattaccattttgccttcgtctcgacagagagagcctcccc
gagttctattttcacaaatgctctgattcaaaggaatacagagctgctcgccgacaatat
gaggatgatgttctgcagcatcagatcagggaagaaaggaagttactctatgttgctgta
acccgtgcacgacagggcctgcgaatctccgcttctgctagacaaaaacccggtcaattt
ctacgggagatttctgaatttctgcaaacagatctaccacaagctgttcataataacccg
aaaaagcgtgttggttattggccccttgattcacttggcgcgcgtagaaaacgggttaaa
ctcgccgctgcagccgtacacaatagatctattgaagaaagtgaagaatcgctcaagaaa
gagccattaaaggctttgatagctggaatgctaaaggaattggatataagcgtagataaa
ccggaaaagaggatttccgcaacagcgctttccaaaaaagatcctaatgtttttttgtta
ccacaaccgcctataaaaaatgcatggcttggagttgcatttcatgcatggatagaaaat
tattactcaacatattcggatatgttattccacgagaacagtgccgacgaatacggcatc
tcgggccctgtctttgagcaatctcaacgattttccccagagcttgaccaattacgacat
aactttatgcagtccgaatggtcttataaaaagcccattgcggttgagcttagccttgaa
tggcttattggtgatgttattgtgccgtgcacaatcgacgctgttttttttgatggcgat
agatatacaattctggattggaagtcgggactatcatctaatcagtatcgcattcagctt
tcgttgtatcggcttgcctttgctgaatggaaaggtgtcaaccctgacaaagtggaagca
aaaatatattttgcggccgataatagaaccatcaaggttaggccatacactgttgatgag
cttggtaagatgccgggatttctgtctgaccttttctcatag
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