Tropheryma whipplei TW08/27: TW332
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Entry
TW332 CDS
T00117
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tws
Tropheryma whipplei TW08/27
Pathway
tws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TW332 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tws03021
]
TW332 (rho)
03019 Messenger RNA biogenesis [BR:
tws03019
]
TW332 (rho)
Transcription machinery [BR:
tws03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TW332 (rho)
Messenger RNA biogenesis [BR:
tws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TW332 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAD67004
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All DBs
Position
364090..365454
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AA seq
454 aa
AA seq
DB search
MSDGEDIRNLSLSKLRTLAIQRGIKSAYRYKKSDLLERLAAADKSVVDAADSPGESPITL
DDLANAIPEGTPERQQTGDIRRVNEPDRVSITRERRGRSRRRRIEEGILDSSQLVPIAGV
LDVLDSCAFIRTTGYSPGDSDIYVSLSQVKKYSLRKGDAVAGEVARVKSIDSYKQRHFPL
VSVNTVNGLEFQQVTTRPAFESGMCVPPTRRLRITPKTAPVEKRIVDLVSPVAKGTRGLV
RGPSKSGRTTVLHEIAAGLCEQNKELHLITLLVGIRPEEATHMSRTLRGEVVVSSMECSP
EEQVGVAELVLERSKRLVEQGRDVLLIVDSMTHLGRAYALVGAPPSRLIGSAAELSALRP
ITSFFLSARCIENSGSITMLATVLSESESAFDRLVEYDLVAVSGMQLVLDKLASERRDFP
AINPIRSSSRDEFTLLSASEQSEVKRLRVRSEGS
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatggtgaggatattcgtaacctcagtctttctaaattacgcactctggcgatt
cagaggggtattaagtctgcctaccggtacaagaagagcgatcttttagaacgcctggcc
gccgctgataagtcggttgtggatgccgctgattcgcccggagagagtcctataacactt
gatgatctggcgaacgctataccggaaggtacgccagagaggcagcaaacaggcgatatc
cggcgtgttaatgagcctgatcgggttagcataactcgtgagcgccgtggcaggagtcgg
cgacggcggatcgaagaagggattttagactcttcacagctcgttccgattgcaggggtt
cttgatgtactggatagttgtgcctttatacgaactaccgggtattctccgggggattct
gacatatatgtctcactgagtcaggtaaaaaaatattcgctccgtaaaggtgatgcagtt
gccggcgaggttgcccgggtaaaaagtattgatagttacaaacagaggcattttccgctt
gttagtgtgaacacagtaaatggtttagaatttcagcaggtaactactcgtccggccttt
gaatcaggtatgtgcgtgccccctacgcgtcgccttagaataacaccaaagacggccccg
gtcgaaaagaggatagttgatctggtatcgccggtggccaaaggaacacgtggccttgtt
cgtggaccaagtaaaagcggtcgcacaactgttctgcacgaaatcgctgccggcctgtgt
gagcaaaataaagaacttcatctgattactctccttgttggtataaggcccgaagaggca
actcacatgtcccgtactttgagaggtgaagtggttgtatccagcatggaatgctcgccc
gaagaacaagttggcgttgcagaattggttcttgagcgttctaagcgtcttgttgaacag
ggtagggatgttcttcttattgtcgattcgatgacccatcttggtcgcgcctatgctctt
gttggtgcgccaccaagtcgcctgattggatccgcagcggaattaagtgctttgcgcccg
atcacaagctttttcctttccgcacgctgtattgaaaatagcggctcgataacaatgctt
gccacagttcttagtgaaagcgagagtgcgtttgaccgattggttgaatatgatcttgtt
gctgtgagcggcatgcagcttgttttggataaactggcctctgagcgccgagattttcca
gccattaaccccatacggagttctagtagggatgaatttactctcctgagtgcttctgaa
cagagtgaggtgaaaaggcttagagtgcgcagcgagggctcgtga
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