Tropheryma whipplei TW08/27: TW374
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Entry
TW374 CDS
T00117
Symbol
nei
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tws
Tropheryma whipplei TW08/27
Pathway
tws03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tws00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TW374 (nei)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tws03400
]
TW374 (nei)
Enzymes [BR:
tws01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TW374 (nei)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TW374 (nei)
DNA repair and recombination proteins [BR:
tws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TW374 (nei)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
CAD67045
LinkDB
All DBs
Position
406503..407387
Genome browser
AA seq
294 aa
AA seq
DB search
MPEGHSIHRSAIQFEHNFVGKKIGISSPQGRFSPGARLLDKQKMISAKAYGKQLLLGFEN
NRFLQVHLGIYGAWQFYGNISCAPTILPGAEGIQSIGAPRRLKGPCITKNSGSTPGASWK
DLMFKHQAQARAKLITDTAGVLLSGPAVCKVLTPEEADELISRLGPDPVVNPMGYNRFIK
AARKSNLQICKLLMNQSAIAGIGNIYRAEILFRNRVNPFLTSNTIPEDTLKRIWDDWTVL
LKCGIKTGQMITMNKAPGHWVYNHHKSPCSVCFHPIDCVNVAGRKLYWCVVCQA
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggggcattcaatccaccgttctgcaattcaatttgagcataatttcgttgga
aaaaaaatagggatttcttccccgcaggggaggttttcccctggtgcgcgtctacttgac
aagcaaaaaatgatatctgccaaagcatacggaaagcagctgcttctgggctttgaaaat
aaccggttcttgcaagttcatctggggatatacggcgcttggcaattctatgggaatata
tcctgcgcaccaactatattgcccggggcagaaggtattcaaagcattggtgcccccagg
cgattgaaggggccttgcataaccaagaacagcggctctacccccggggcatcttggaaa
gacctgatgtttaagcatcaggcccaggcaagagctaagctcattacagacaccgcaggg
gttcttctgagcggaccggcggtctgcaaagttttgacacccgaagaggcggatgagctt
atctcgcgacttggtccggatccggtcgtcaatccgatgggatacaaccgctttatcaaa
gcagctcgaaaaagcaacctccaaatatgcaagctactcatgaaccagtctgctatcgct
ggtatagggaatatataccgcgcggaaattctattcagaaatagagtaaacccatttctt
acctcgaacaccatcccggaagacaccttaaaaaggatatgggacgactggacagtcctg
ttaaaatgcggaataaaaaccggacagatgatcactatgaataaggcgccgggacactgg
gtttacaatcaccacaagtccccatgttcagtctgctttcacccaatagattgcgtaaac
gtggcaggcagaaagctgtactggtgcgtcgtctgtcaagcgtag
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