Thiomicrorhabdus xiamenensis: HQN79_00840
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Entry
HQN79_00840 CDS
T07160
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
txa
Thiomicrorhabdus xiamenensis
Pathway
txa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
txa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HQN79_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
txa03019
]
HQN79_00840
03009 Ribosome biogenesis [BR:
txa03009
]
HQN79_00840
Enzymes [BR:
txa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HQN79_00840
Messenger RNA biogenesis [BR:
txa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HQN79_00840
Ribosome biogenesis [BR:
txa03009
]
Prokaryotic type
rRNA helicases
HQN79_00840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_19
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QKI88220
UniProt:
A0A7D4SHG1
LinkDB
All DBs
Position
complement(184929..186689)
Genome browser
AA seq
586 aa
AA seq
DB search
MSEITFKDLGLKPEILSAISEIGYETPSPIQAQAIPALLQGGDILGMAQTGTGKTAAFAL
PALSNADIRQKNPQILVLAPTRELAIQVSEAFQSFAHHMKGFHVLPIYGGSDYGSQIRAL
KRGVHVVVGTPGRVMDHMRKGTLKLDELKLLVLDEADEMLRMGFIDDVEWVLEHTPNSRQ
IALFSATMPKEIHRIASNYLNNPTEVIIKQKTATATTITQKYLMVSGGHKLDALTRILEA
DSADIDGLIIFVRTKNATVELAEKLEARGYAAAALNGDIAQNQRERIVDQLKDGKLDILV
ATDVVARGLDVPRISHVVNYDIPQDNESYVHRIGRTGRAGRSGTAILFVTPRERRLLASI
ERTTKQKVAEMHLPSAQMINDSRIERFKNRIVEALQMDELGFYQDLIEQVENEQNVPAVE
VAAALARLMQGDVPFFIEDKPVREVSKRDRDRDFDRDNRRGRGDRDRDGGERRQRRRQSS
SPDEGMARYRLEVGRTHGVRPGNIVGCIANEAGLDSEFIRQLTIEDSYSMVDLPEKMPRE
ALNDLKKAWVCGQQLQISEVKTQGAGRKRLSRRAPDNGRSHKKQRN
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatcacttttaaagacctcggtctaaaaccagaaattctttccgcgatcagc
gagatcggttacgaaacgccgagcccgatccaggcccaagcgatccctgcgttattgcaa
ggtggcgatattctgggaatggcacagaccggtaccggtaaaaccgcagcctttgccttg
cctgcactgagcaatgcagacatccgtcaaaagaacccgcaaattctcgtacttgcgccg
actcgcgaactggccattcaggtttccgaagccttccagagcttcgcccaccatatgaaa
ggctttcacgtgctgccgatctacggtggctccgactacggttcgcagatccgcgctttg
aagcgcggcgtgcatgtcgttgtcggtaccccgggtcgtgttatggatcatatgcgcaaa
ggcacgctgaaacttgacgagctgaaacttctggttctcgacgaagccgacgaaatgctg
cgcatgggctttatcgacgatgttgaatgggtacttgaacacacgccaaacagccgtcag
attgcacttttctcggcaaccatgccgaaagaaattcaccgtatcgcaagcaactacctg
aataatccgaccgaagtgattatcaagcagaaaactgcgactgcaaccaccattacccag
aaatacctgatggtcagcggcggtcataaactggatgccttaacccgaattctggaagcc
gattccgccgacatcgacggcctgatcatcttcgtccgcaccaaaaacgcgactgttgaa
ctggccgaaaaactggaagcacgcggttatgccgcggcggctctaaacggtgacatcgca
cagaatcaacgtgagcgtatcgttgaccagctaaaagacggcaaactggacatcctggtt
gcgaccgacgttgttgcccgtggtcttgacgtaccgcgtatcagtcacgttgttaactac
gatattccgcaagacaacgaatcttacgtacaccgtatcggtcgtaccggccgtgccggt
cgttccggaacggccattctgttcgttactccacgcgagcgccgtctactggcgtcgatc
gaacgcaccaccaaacagaaagttgccgaaatgcacctgccttcggcgcagatgattaac
gacagccgtatcgaacgtttcaaaaaccgtattgtcgaagcgctgcaaatggatgaatta
ggcttctatcaagacctgatcgaacaggtagaaaacgaacagaatgttccggctgtcgaa
gtggccgcggcactggctcgtctaatgcagggagacgttcctttctttatcgaagacaag
ccggtgcgagaagtatccaaacgcgaccgtgatcgtgactttgatcgcgataaccgtcgc
ggccgaggcgatcgtgatcgtgacggtggagaacgtcgccagcgtcgtcgtcaatcctct
tcgccagatgaaggaatggcgcgctaccgtctggaagtcggtcgtacccacggtgtccgc
ccgggtaacattgtcggctgtatcgccaatgaagccggtctggacagtgagtttatccgt
cagctgaccattgaagacagttactctatggttgatttgccggaaaaaatgccgcgtgaa
gctttaaacgacctgaaaaaagcctgggtatgcggtcagcagttacaaatttccgaagtc
aaaacacaaggtgccggacgtaagcgtctaagccgaagagcaccggacaacggcagaagc
cacaagaaacagcgcaattaa
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