Thiomicrorhabdus xiamenensis: HQN79_06960
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Entry
HQN79_06960 CDS
T07160
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
txa
Thiomicrorhabdus xiamenensis
Pathway
txa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
txa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HQN79_06960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
txa03019
]
HQN79_06960
Enzymes [BR:
txa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HQN79_06960
Messenger RNA biogenesis [BR:
txa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HQN79_06960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
CMS1
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKI89322
UniProt:
A0A7D4T0Q2
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All DBs
Position
1499524..1500951
Genome browser
AA seq
475 aa
AA seq
DB search
MQFSQLNLNDKILKAVEAAGYTTPTPIQAQAIPAIIEGHDVMAAAQTGTGKTAGFTLPLL
EKLSQGRIAKSNQARALVLTPTRELALQVSESVETYGKELPLRSTVVYGGVKINPQMQRL
RKGVDILVATPGRLLDLYQQNAIRFDDLEVLVLDEADRMLDMGFIRDIKKILTLLPAKRQ
NLLFSATFSNEIRALAKGLVHNPVEISVTPENSTAETVVQSIYPVDKASKTRLLIHLIKE
HAWYQLLVFTRTKHGANRLATQLDKHGIKAAAIHGNKSQNARIRALNEFKENKLQVLVAT
DIAARGIDIDQLPHVVNFDLPHVSEDYVHRIGRTGRAGCDGEAISLVCAEEYKELVGIEN
LINQILPRKILSGFEPQKALPESKLGIKKKKPKKPKKNKTLQAIQEPGSKPEVKTPPKAK
PENRNGGSQKDDTKPRRPRRKPQGNNAKGKSAENRSDNPSRPQRSRRRPKTNNSN
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttagccaactaaaccttaacgacaaaatcctcaaagcggtcgaagcagcggga
tacacgaccccgacccctatccaggcacaagccattccggcgattatcgaaggccacgat
gtgatggcggccgcacagaccggaaccggtaaaaccgccggatttaccttaccgcttctg
gaaaagctatctcaagggcgtatcgccaaatccaatcaggcgcgcgctctggtgttaacc
ccaacccgggaactggcgcttcaggtcagcgaaagcgtagaaacctatggtaaagaactg
cctttgcgttcaacggttgtgtatggcggagtcaaaatcaacccgcaaatgcagcgtctg
cgcaaaggcgtcgatattctggtcgcaacaccgggacgcctgcttgacctttatcagcaa
aacgccattcgtttcgacgatctggaagtactggtactggatgaagctgatcgcatgctg
gatatgggctttatccgcgatattaaaaagatcctcactctactaccggccaaacgtcag
aacctgctgttctcggcaacgttctccaatgaaatccgcgctttggctaaaggtctggta
cacaatccggtcgaaatttccgttaccccggaaaactcgaccgcggaaaccgtggtacag
tctatctacccggtcgataaagccagcaaaacccgactgctgatccatctgatcaaagag
cacgcctggtaccagcttctggtctttacccgtaccaaacacggtgccaatcgactggcg
acccagctcgacaaacacgggatcaaagccgccgcgatccatggcaataaaagtcagaat
gcccgtatccgcgcattaaacgaatttaaagaaaataaactacaggtgctggtcgcaacc
gatatcgccgcccgcgggatcgatattgaccagctgccacatgtggtcaacttcgatctg
ccgcatgtctccgaagactatgtacaccgtatcggacgaaccggtcgcgccggatgcgat
ggagaagcgatttctctggtctgtgccgaagagtataaagaactggtcggcattgaaaac
ctgatcaaccaaatactgccgcgaaaaattctgtccggattcgaaccgcagaaagccttg
cctgaatccaaactgggcattaaaaagaaaaagcctaaaaagccgaagaaaaataaaaca
ttacaggctattcaagagccgggaagcaaacccgaagtgaaaacgcctccgaaggctaaa
ccggaaaaccgtaacggcggcagccaaaaagatgacaccaaacctcgtcgtccgagacgc
aaaccgcaaggaaacaacgctaagggtaaatcggcagaaaatcgttcggacaatccgtcc
cgtccgcaaagatcccgacgtcgcccgaaaaccaataactcgaactaa
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