Thiomicrorhabdus xiamenensis: HQN79_07065
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Entry
HQN79_07065 CDS
T07160
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
txa
Thiomicrorhabdus xiamenensis
Pathway
txa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
txa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HQN79_07065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
txa03019
]
HQN79_07065
Enzymes [BR:
txa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HQN79_07065
Messenger RNA biogenesis [BR:
txa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HQN79_07065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_25
HTH_CLF_N
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
QKI89341
UniProt:
A0A7D4SNC0
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All DBs
Position
1520255..1521433
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AA seq
392 aa
AA seq
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MSFAKLGLSDPILKALSDSGYQTPTEIQKKAIPLILKGEDIIASAQTGTGKTASFVLPIL
QKLDNGETVRGRSIRALILVPTRELAIQVEKSILAYGKHLQLSSVAVYGGSDLEENKQRL
AQGVDILVATPGRLLDLAYQRSVFFNDLEFLVLDEADRMLDMGFIDDLNKIIDRLPSHRQ
SMLFSATINPKLRYLADTVYDDAVEIKVSSKGKKSNIEQWMIAVDKDTKSALLSHLIKEN
QWDQALIFVEKKHSAAKLVEQLGKRGIIADSIHAGRSQAQREKVWNDFKTGKLQFLIATG
VAARGLDMDNLSRVVNYDLPYPAEEYIHRIGRTGRAGKSGEAISLVSKDDFKNLCMIESL
LDHLLERREVAEFPVRKAVPISILNYQPRSKR
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgccaaactaggattatccgacccgattcttaaagccctgtccgattccggc
tatcagacaccaaccgaaattcagaaaaaggctattccacttattcttaaaggggaagat
attatcgcctcggcgcagacaggtaccggtaaaaccgccagttttgtcctgccgattttg
caaaaactcgataacggcgaaacggtacgcgggcgttcgatccgtgcgctgatactggtg
ccgacacgcgaactggcgattcaggtggaaaaaagcatcctggcctacggcaaacatctc
cagctcagttcggttgctgtttatggtggtagcgaccttgaagagaacaaacaacgtttg
gcacaaggcgtggatattctggtcgccacgcccggcagactgctggatctcgcctaccag
cgttccgtgttttttaacgatttggaatttctggtgctggatgaagccgaccgaatgttg
gatatgggctttatcgacgatctcaacaaaattatcgaccgccttccaagccatcgccaa
agtatgctgttttcggcgaccattaaccctaaattacgctatctggccgataccgtttat
gacgatgcggttgagataaaggtttcgtccaaaggcaaaaaatccaatattgaacagtgg
atgattgctgtcgataaagacaccaaatctgctctactgagtcatttgattaaagaaaac
caatgggatcaggcactgatttttgtcgagaaaaaacactctgccgctaaactggtcgaa
caactcggaaagcgtggcattatcgccgactccattcatgccgggcgcagtcaggcgcaa
cgtgaaaaagtctggaatgatttcaaaaccggcaaactgcaatttctgatcgccaccggc
gttgctgctcgcggattggatatggacaacctcagccgagtcgtcaactacgacctgcct
tatcctgccgaggaatatattcaccgcatcgggcgaaccggtcgtgccggaaaatccggt
gaagcgatctctctggtatccaaagacgactttaaaaatctgtgcatgatcgaaagccta
cttgaccaccttctggaacgtcgcgaagtggcagaatttcctgtaagaaaagccgttccc
atttcaatactgaactaccaaccgcgttcgaaacgctaa
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