Thiomicrorhabdus xiamenensis: HQN79_07825
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Entry
HQN79_07825 CDS
T07160
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
txa
Thiomicrorhabdus xiamenensis
Brite
KEGG Orthology (KO) [BR:
txa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
txa03016
]
HQN79_07825
Enzymes [BR:
txa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HQN79_07825
Transfer RNA biogenesis [BR:
txa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HQN79_07825
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QKI89482
UniProt:
A0A7D4T0X2
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All DBs
Position
1684293..1685504
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AA seq
403 aa
AA seq
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MTHQDRKSRAYRYIDSHQQLAELCSRLSDQSDLTWLAIDTEFVRVDTYYPQLSLVQIATQ
ERDFYLIDPLAIETSYQDASANEASALRPLVDLLQNERICKVFHSARQDIEVLYQLESRM
PQNLFDTQIAAIFLGHGDLAGFARVIEAELNIKLPKSQTRTNWHARPLSEEQIEYALDDV
DYLASLYQKCLQTLGDDELHAVTEDCQQLLQPQLYDLEPEKAWLKLKGLKRFNPKQLAIV
QILAQWREEYAVEHNQPKKWTLSDEVLLQIAKRPPKTVQALYKVPNIKTSSVREFGETWI
ALIDRVFEQNPESYPTLPKAGKHPSAQEEILLALTQSVCQQISLQYKVQLSNLSSKEELL
TLIRHPHQSPWSGWRHLLIGIPLQKLLEGRASLKLEGQEIRIQ
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgacacatcaagacagaaaatcccgcgcctatcgatatatcgacagccatcagcagtta
gccgaactttgttcccgtttaagcgatcagagcgacctcacctggctggcgatcgacacc
gagtttgtccgcgtcgacacctattatccgcagctcagtctggtacagattgcgacccag
gagcgcgacttttatctgatcgaccctctcgccatcgaaacctcatatcaggacgcatcg
gctaatgaagcttccgctctccgtccccttgtcgaccttctacagaacgaacgtatctgc
aaggtgtttcatagtgcccgacaggatattgaagtactttatcagctggaaagccgcatg
ccgcaaaaccttttcgacacacagattgcggcgatttttctggggcacggagacctggca
ggattcgccagagttatcgaagcggagttgaatataaaattgccgaagagccagacacgt
accaactggcacgcccgtccactcagcgaggaacagatcgaatacgctctggacgatgtc
gattacctggcctctctttatcaaaaatgtctgcaaacgctcggcgatgacgagttacac
gccgtcacggaagactgtcagcaactgttacagccccagctgtacgatctcgaaccggaa
aaggcatggctaaaactcaaaggcctcaaacgcttcaacccgaaacagctggccatcgtg
caaattttggctcagtggcgtgaagagtacgccgttgaacacaatcagcctaaaaaatgg
actttgagcgacgaggttttgctgcaaatagccaagcgcccgcccaaaaccgttcaggcg
ctgtacaaggtaccgaatatcaaaacgtccagtgtccgagaattcggcgagacctggatc
gctctgattgaccgggttttcgaacagaatccggaaagttacccgactctgccaaaagcc
ggtaaacacccttcggcacaggaagaaattctgctcgccttaacgcagtcggtctgtcag
caaatcagcctgcagtacaaagtgcaactctcgaatctgagcagtaaagaagaattgctg
acgctgattcgccatccgcaccaatcgccgtggtcggggtggcgtcacctgcttatcgga
attccattgcaaaagcttctggaaggccgtgcctctctgaaacttgaaggccaagaaatc
cggattcaatga
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