Thiomicrorhabdus xiamenensis: HQN79_08495
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Entry
HQN79_08495 CDS
T07160
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
txa
Thiomicrorhabdus xiamenensis
Pathway
txa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
txa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HQN79_08495 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
txa03019
]
HQN79_08495 (rnr)
03016 Transfer RNA biogenesis [BR:
txa03016
]
HQN79_08495 (rnr)
Enzymes [BR:
txa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HQN79_08495 (rnr)
Messenger RNA biogenesis [BR:
txa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HQN79_08495 (rnr)
Transfer RNA biogenesis [BR:
txa03016
]
Prokaryotic type
tRNA degradation factors
HQN79_08495 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QKI89604
UniProt:
A0A7D4SZ56
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All DBs
Position
complement(1832109..1834463)
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AA seq
784 aa
AA seq
DB search
MTTEKQTDLNDPHATREAEKYDNPIPSREFILQTLEELQKPLRLFEVAKAVNVDEDDEER
YEALSRRLKAMVRDGQLIRNRRGAFGLLKKMDLIKGRVLGHPDGFGFVVPDEGGKDLFLS
EKEMHKILHGDRVIASVVGEDRRGRQEGIIVEVTEHCTAQLLGRLSLEDGMAWVRPDNNR
IAQDVFIPQDGLMDAKEDQIVLVEILHQPSARSGPIGKVVEVVGDYMAPGMEIDSAIHAH
GIPNSWSDALIAELDQIGDEVTEADLEGRKDLRNLQLVTIDGADTKDFDDAVFAKRRKNG
WKLIVAIADVSHYVKPGTELDKEALKRGNSVYFPQRVVPMLPSKLSDGLCSLNPHVDRLC
MVADMAIDESGKLERTQFYQAVMNSKARLTYTQVNEMVTDANSPLRSEYSEQIENVDTLY
ELFKVLQKAREERGALEFDTTETRIVFDDERKIKEIVPVVRNDAHKLIEECMLMANVATA
RFLKWHKMPIVYRVHESPMEDRLQNLRTFLADFGLTLNGGDTPTAQDFAEVAAQVEDKPY
KHLVQTVMLRSMNQAVYHPENKGHFGLNYENYTHFTSPIRRYPDLLVHRAIRHVWSKQPI
SDFIYDDAKMVEMGQHCSDTERRADDATRDAETFLKCEFLSHRLGEEYEAVITAATNFGL
FVEMDPLYVEGLVHITELGDDYFHYDNARHCLKGERTGKVYRLGDRIKVQVAQVNLDERK
VDLRFIESLTESEDTGESEEVREDSAPAEGESQDDNGAKKKPRKKRYYRKKRSGGKSSKP
KAKS
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
gtgactactgaaaaacaaacagaccttaacgatcctcatgcaacgcgtgaggcagaaaag
tacgacaatccaatccctagccgtgaatttattttgcagacgctggaagagttacagaaa
cctttgcgcctgtttgaagtagccaaagcggtaaatgtcgacgaggatgacgaagaacgc
tatgaagctttgtcgcgccgtctgaaagcgatggtgcgtgacggccagttgatccgaaac
cgccgcggtgctttcggtctgctgaagaagatggatctgattaaaggtcgcgttcttggc
cacccggacggtttcggttttgttgttcccgatgagggcggcaaggacctgttcctgtcc
gaaaaagagatgcataaaatcctgcatggcgatcgcgttatcgcgtcggttgtcggagag
gatcgtcgtggacgtcaggaaggtattatcgttgaggtaaccgaacactgtaccgcccag
cttctgggacgcttgagtctggaagacggtatggcttgggtacgtccggataataatcgc
attgcgcaggatgtattcattccgcaggatggtttgatggatgcgaaggaagatcagatt
gttctggttgaaattctgcatcagccgtcggcacgttccggcccgatcgggaaagtggtt
gaagtcgtcggggattatatggctccggggatggaaatcgattcggcaattcacgcccac
ggaattccgaatagctggtcggacgccctgattgccgagctggatcagatcggtgacgag
gtgactgaagcggatctggaaggacgtaaggatctccgtaatctgcagctggtgacgatt
gacggcgcggatacgaaagatttcgatgatgcggtgtttgccaagcgtcgcaagaacggc
tggaagcttatcgtcgccattgccgacgtatcgcattatgttaagcctggaaccgagttg
gataaggaagcgctcaagcgcggaaactcggtttatttcccgcagcgcgtggttccgatg
ctgccgtccaagctttccgacgggctatgttcattgaatcctcatgttgaccgtctttgt
atggttgctgatatggcgattgacgagagcggtaagcttgaacgtactcagttctatcag
gcagtaatgaactccaaggcgcgtttaacctatactcaggttaacgaaatggttaccgat
gccaattctccgctgcgttcagagtattccgagcagatcgaaaacgtcgatacgctatac
gaattgttcaaggttctgcagaaggctcgtgaagaacgcggtgcgctggagtttgatact
actgaaacgcgcattgtgtttgatgacgagcgtaagatcaaagagattgttccggtcgtg
cgcaatgacgctcataaactgatcgaagaatgtatgttgatggcaaacgtggctacggcg
cgtttcctgaaatggcacaaaatgccgatcgtgtatcgtgttcacgaatcgccgatggaa
gaccgcttgcagaacctgcgcactttcctggcggactttggtttgaccttaaacggtggc
gatacgccaaccgctcaggattttgctgaagttgccgctcaggtagaggataagccgtac
aaacatctggtgcagacggttatgctgcgttcgatgaatcaggctgtgtaccaccctgaa
aacaaaggtcactttggtctgaattatgagaactatacgcactttacttcaccgattcga
cgttatccggatctgttggtacatcgtgcaatccgtcatgtttggagtaagcagcccatt
tcggactttatctatgatgatgccaaaatggtggagatggggcagcactgttcggatact
gaacgtcgtgcagacgatgcaacccgtgatgcagaaaccttcttgaagtgcgaattcctt
tctcaccgactgggtgaagagtatgaagcggtgatcactgctgcaaccaacttcggtctg
tttgttgaaatggatcctctgtatgttgaaggcttggtgcacattaccgagttgggtgac
gactacttccattacgataacgcccgtcactgcctaaaaggggagcgtacaggtaaagtt
taccgtttaggtgatcgcataaaggttcaggttgctcaggttaaccttgatgagcgcaaa
gtagatttgcgttttatcgagagcctgacggaatccgaggataccggcgaatccgaagag
gttcgtgaggattctgctccggccgaaggcgaatcacaagacgataatggcgctaagaaa
aagccacgtaagaaacgctactatcgcaagaagcgtagtggaggtaaatcttccaagccg
aaggcgaaatcgtga
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