Thalassospira xiamenensis: TH3_05965
Help
Entry
TH3_05965 CDS
T03639
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
txi
Thalassospira xiamenensis
Pathway
txi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
txi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TH3_05965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
txi03021
]
TH3_05965
03400 DNA repair and recombination proteins [BR:
txi03400
]
TH3_05965
Enzymes [BR:
txi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TH3_05965
Transcription machinery [BR:
txi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TH3_05965
DNA repair and recombination proteins [BR:
txi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TH3_05965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AJD51313
UniProt:
A0AB72UAX4
LinkDB
All DBs
Position
1294296..1298489
Genome browser
AA seq
1397 aa
AA seq
DB search
MNELMKIFGQPQGTQSFDQIRIQIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFMKSL
PSRLGLLLDMTLKDLERILYFENYVVIEPGLTPLKMGELLSEDQYMTAQEEYGEDSFRAG
IGAEAIRDMLAAIDLDDERETAKIDLKETNSEAKRKKLVKRLKLIEAFQESGARPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRPITGANKRPLKSMSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGP
NLKLHQCGLPKKMALELFKPFVYAKLELYGMATTIKAAKRMVEKERAEVWDILEQVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARTLMMSTNNILSPASGKPIIVPSQDIVLGLYYISMERDGQPGEGMSFVNIAEIEQALDA
GVVTLHSKINARYKTVDENNEPITIRVQTTAGRMLLSELLPRHPRIPFATINKLLTKKDV
SNVIDVVYRHCGQKETVIFADRMMGLGFNWACKAGISFGKDDMIIPEAKETLVGATHDKV
KEYEQQYQDGLITRGEKYNKVVDAWSQCTDDVSEAMMKVISATAEGDNVNSVYMMAHSGA
RGSAAQMRQLAAMRGLMAKPDGSIIETPIISNFKEGLTVQEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDSIITQHDCGTERGLDIAAVVDSGEVIETLSDRILGRFTADEIVN
PSTGEVIVPKNEMVVEDHLDLIEKAGVEMARIRSVLTCDAETGVCGHCYGRDLARGTTVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEVSGVEANFDATVKLKNRAVVTNSS
GVMIVMARNLEILLIDKTGRERAKYRVPYGAKLLADDGDQITRGQKLAEWDPYTLPIITE
KEGYVNYVDLLENVTIREVYDEATGIASKTVIDWKSMPKASDLKPRVTLRNENGEVINLD
NGLEARYFLSVDAILSVENGQKVNAGDVLARIPREGSKTRDITGGLPRVAELFEARKPKD
HAIIADIAGRVEFGKDYKNKRRVIVHPLEDSGLTEPVEYMIPKGKHLAVQEGDFVEKGDQ
LLDGSPVPHDILRVMGVPALADYLVNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEVTKT
GDTTLLVGEIIDRVDFDAENERAVKEGGELAEAAPVLQGITKASLQTHSFISAASFQETT
RVLTEAAVSGKTDTLIGLKENVIVGRLIPAGTGAVMNRFRALAAERDKNVQIEAEEEIGD
NFGPQAGAESPSLPAGE
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttgatgaagatcttcgggcagccgcagggcacccagagcttcgatcagatc
cggattcagatcgccagcccggagcgtatccgctcctggtcgtttggcgagatcaagaaa
ccggagaccatcaactaccggaccttcaaaccggaacgcgacggcctgttctgtgcgcgc
atttttggtccggtgaaggattacgaatgcttgtgcggcaagtacaagcgtatgaaatat
cgcggcattatctgtgagaaatgcggcgtcgaagtgactctggccaaagttcgtcgtgaa
cgtatgggccatatcgaactggcggcacctgttgcccatatctggttcatgaagtcgctg
ccgagccgcctgggtctgctgctggacatgacgctcaaggatcttgagcgcattctgtat
ttcgaaaactatgtggtcatcgagccgggtctgaccccgctcaagatgggtgagcttctt
tcagaagatcagtacatgaccgcacaggaagagtatggcgaagacagtttccgtgccggt
atcggtgccgaagccatccgcgacatgcttgcagcgatcgatcttgatgacgaacgcgaa
accgcgaaaatcgacctcaaggaaaccaattccgaagccaagcgcaagaagctggtcaaa
cgcctgaagctgatcgaagctttccaggagtccggtgcgcgtccggaatggatgatcctt
gaagtgattccggtcattccgccagaactgcgtccgctggttccgctggatggcggccgt
ttcgcaacgtccgaccttaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtctg
aagcgcctgatcgagcttcgtgcgcccgatatcatcgtgcgtaacgaaaaacgtatgctt
caggaatcggttgatgcgctgtttgacaacggccgtcgcggtcgtccgatcaccggtgcc
aacaagcgtccgctcaaatcgatgtcggacatgctgaaaggcaagcagggccgtttccgt
cagaaccttctgggtaaacgcgtcgactattccggtcgttcggttatcacggttggtccg
aacctgaaactgcatcagtgcggcctgccgaagaaaatggcgctcgaactgttcaagccg
ttcgtctatgcgaagcttgagctgtacgggatggcaaccaccatcaaggctgcaaagcgt
atggtggaaaaagagcgtgccgaagtctgggatatccttgaacaggttatccgtgaacat
ccggtcatgctcaaccgtgcaccgacccttcaccgtcttggtatccaggctttcgagcct
accctgatcgaaggtaaggcgatccagctgcatccgctcgtctgtacggctttcaacgcc
gacttcgacggtgaccagatggccgttcacgtgccgctgtcgcttgaagcacagcttgaa
gcacgtaccctgatgatgtcgaccaacaacatcctttcgccggcttcgggtaaaccgatc
atcgtgccgtcgcaggatattgtccttggtctgtactacatctcgatggaacgcgacggt
cagccgggcgagggcatgtcctttgtcaatatcgctgaaatcgaacaggcacttgatgcc
ggtgttgtgaccctgcattcgaaaatcaatgcacgttacaaaaccgtcgatgaaaacaac
gagccgatcaccatccgtgttcagaccacggcgggtcgtatgttgctgtccgaactgctg
ccgcgtcatccgcgcatcccgttcgcgaccatcaacaagctgctgaccaagaaagacgtg
tcgaacgttatcgacgtcgtctatcgtcactgtggccagaaagagaccgttatctttgct
gaccgcatgatgggtcttggcttcaactgggcgtgcaaagccggtatttcgtttggcaag
gatgacatgatcattccggaagccaaggaaaccctggttggtgcgacccatgacaaggtc
aaggaatacgagcagcagtatcaggacggtttgatcacccgcggtgagaaatacaacaag
gtcgtcgacgcctggtcgcagtgcaccgatgacgtttccgaagcgatgatgaaagtcatc
tcggcaacggcagaaggtgacaatgtgaactcggtttacatgatggcgcactccggtgcc
cgtggttctgctgcccagatgcgtcagctggctgccatgcgcggcctgatggcaaaaccg
gatggctcgatcatcgagaccccgattatctcgaacttcaaagaaggcctgaccgtgcag
gagtacttcaactccacccacggtgcccgtaaaggtctggccgataccgcattgaaaacg
gcgaactcgggttacctgacccgtcgtctcgtcgacgtcgcacaggacagcatcatcacc
cagcatgattgcggtactgaacgtggcctcgacattgctgcggttgtcgactccggcgaa
gttatcgagacgctgtctgatcgtatcctcggtcgtttcaccgctgacgagattgtcaat
ccgtcaaccggcgaagtcatcgttccgaagaacgaaatggttgtcgaagatcaccttgat
ctgatcgaaaaagcaggcgtcgaaatggcgcgtatccgctcggtcctgacctgtgatgcc
gaaaccggcgtttgcggccattgctatggtcgtgacctggcacgtggtaccacggtgaac
attggtgaagctgtcggtgttatcgccgcgcagtcgatcggtgagccgggcacgcagctt
acgatgcgtacgttccacattggtggtgcggcacagcgtggtgcggaagtttcgggtgtc
gaagccaacttcgatgcgaccgtcaaactgaagaaccgtgctgtcgttacgaattcgagc
ggtgtcatgattgtcatggcacgtaacctcgaaatcctgctgatcgacaagaccggccgt
gaacgtgcgaaataccgcgtcccgtacggtgcgaaactgcttgctgatgacggtgaccag
atcacgcgcggccagaaactggccgaatgggatccgtacaccctgccgatcatcaccgag
aaagaaggttatgtgaactatgtcgaccttctcgagaacgtaaccattcgcgaagtctat
gacgaagcgacgggtatcgcctcgaaaacggttatcgactggaagagcatgccgaaggca
tccgaccttaagccgcgcgttacgcttcgtaacgaaaacggcgaggtcatcaacctggat
aacggccttgaagcccgttacttcctgtcggttgatgccattctctcggttgagaacggt
cagaaagtcaacgccggtgacgtgcttgcacgtattccgcgcgaagggtcgaaaacccgt
gacatcaccggtggtctgccgcgtgtggctgaattgttcgaggcacgcaagccgaaggac
cacgccatcatcgccgacatcgctggtcgtgtcgagttcggtaaggattacaagaacaag
cgccgtgtcatcgtgcacccgcttgaagacagtggtctgaccgaaccggttgaatacatg
atcccgaaaggcaagcatcttgccgttcaggaaggggacttcgtagagaagggcgaccag
ctgcttgatggctcgccggttccgcacgatatccttcgcgtcatgggcgttccggcactg
gccgattacctggtcaacgagatccaggaagtctaccgtttgcagggcgttaagattaac
gacaagcacatcgaagttatcgttcgtcagatgcttcagaaagtggaagtgaccaaaacc
ggtgacaccacgcttctggttggcgaaatcatcgaccgtgtcgatttcgatgccgaaaac
gaacgtgccgttaaagaaggcggcgaactggccgaagctgcaccggtccttcaggggatc
accaaagcatcgctccagacgcattccttcatctcggccgcgtcgttccaggaaaccaca
cgcgttcttaccgaagcagccgtatcgggcaaaaccgataccctgatcggtctgaaagaa
aacgtgattgtgggtcgtctgatcccggcaggtaccggtgcggtgatgaaccgcttccgc
gcccttgccgccgaacgcgacaagaacgtacagatcgaggcagaagaggaaatcggcgac
aatttcggcccgcaggccggtgccgagtccccgtccttgccagccggcgagtaa
DBGET
integrated database retrieval system
