Thalassospira xiamenensis: TH3_10245
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Entry
TH3_10245 CDS
T03639
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
txi
Thalassospira xiamenensis
Pathway
txi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
txi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH3_10245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
txi03019
]
TH3_10245
03400 DNA repair and recombination proteins [BR:
txi03400
]
TH3_10245
Enzymes [BR:
txi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TH3_10245
Messenger RNA biogenesis [BR:
txi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TH3_10245
DNA repair and recombination proteins [BR:
txi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TH3_10245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJD52165
UniProt:
A0AB72UD21
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All DBs
Position
2190984..2192834
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AA seq
616 aa
AA seq
DB search
MPDTAPLPDLLDRPAQRLPIDVLREVFGYDSFRGQQAEIIDHVIAGNDALVLMPTGGGKS
LCYQIPALCRSGTAIVVSPLIALMKDQVDALSQLGVKAAFINSTLSPDAAREIETRAIDG
DIDLLYVAPERFATDRFLNLLDRISISLFAIDEAHCVSQWGHDFRPEYRRLDLLPTRFPH
VPRVALTATADTPTRKDIAENLHLTNAQCFLTGFDRPNITYRIETKGNSKQRLLSFLNRE
HPEDAGIVYCLSRRKTEDVAQWLTDNGRPALPYHAGLTQETRQLHQDRFLREDGLIICAT
VAFGMGIDKPNVRFVAHLNLPKSMEAYYQETGRAGRDGLPANAWMNYDLSDIVSIRSMLA
SSDAPDSQKRIESRKLDALVGLAETTRCRRQVILSYFGEEDTKPCGNCDTCLEPVDTWDA
TEASRKALSAVYRTGQRFGPAHIIEVLMGRKTEKIRQNSHDDLSVYGIGKDVSQPQWRSV
FRQLLAMGYLQVDVEGHGGVYLTEESRPVLRGEKVVEMRKDPGESKRTMTKRLRDFDTEF
ENEEDRDLWERLRTLRHELATSQNVPPYVIFSDRTLWEMVRFKPRTLQDMASINGVGVKK
LDQYGLVFLDVMDGRR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgatacagcaccactacccgacctgctcgaccgacctgcgcaacgtctgccgatt
gacgtcctgcgggaagtttttggctatgacagttttcgcggtcagcaggccgaaatcatc
gatcatgtgattgccggaaacgatgcactggtcctgatgccgaccggtggcggcaaatct
ttgtgttatcagatccctgccctttgtcgttcgggaacggcaattgttgtatcgcccctg
attgccttgatgaaggatcaggtcgatgcgctaagccagcttggcgtcaaggcggccttt
atcaattcaacactttccccggacgcggcgcgcgaaatcgaaacccgcgcaattgatggc
gatatcgatctgctttatgtcgccccggaacggtttgcgacggatcgttttctgaacctg
cttgaccggatcagcatatcgctgtttgccattgacgaagcacactgtgtttcgcaatgg
gggcatgatttccgcccggaataccgtcggcttgaccttctgccaacgcgtttcccgcat
gtgccgcgggttgccttgaccgcaactgcggacacgccaacccgcaaggacattgccgaa
aacctgcatctgacaaatgcgcaatgcttcctgaccggctttgaccgcccgaacattacc
tatcggatcgaaacaaagggcaattcaaagcagcgccttctgtcgtttctgaaccgtgag
catcccgaagatgccgggattgtctattgcctgtcgcgtcgcaagaccgaggatgtcgcg
caatggcttaccgataacggtcgcccggccttgccttatcacgcaggtctgacacaggaa
acaagacagcttcatcaggacaggttcctgcgcgaggacggtctgatcatttgcgccacg
gtcgcctttggcatggggatcgacaagccgaatgtccgttttgtcgcccatctgaacctg
cccaagagcatggaagcctattatcaggaaaccggccgtgcgggccgcgatggtctgcca
gccaatgcatggatgaattacgatctatccgatatcgtttccattcgttccatgctggca
tcatccgatgcgcccgacagtcagaaacgcatcgaaagccgcaagctcgatgcgctggtt
ggccttgccgaaaccaccagatgccgccgacaggtgattttgtcctatttcggcgaagaa
gacacaaaaccctgcggcaattgcgatacctgccttgaaccggtcgatacctgggatgcg
accgaggcatcgcgtaaggcactttcggcggtctatcgtaccggacagcggttcggtcca
gcccacatcatcgaagttctgatgggacgcaaaaccgaaaaaatccgtcagaacagccat
gacgatctttcggtctatggtattggcaaggatgtttcccaaccgcaatggcggtcggtt
ttccgccagttgcttgccatgggatatcttcaggtcgatgtcgaggggcacggtggcgtt
tacctgaccgaagaatcccgccccgtcctgcgcggtgaaaaagtcgtcgaaatgcgcaag
gacccgggcgaaagcaaacgcaccatgaccaagcggctgcgtgatttcgataccgagttc
gagaacgaggaagatcgtgatctgtgggagcgcctgcgcaccctgcgccacgagcttgcc
accagccagaatgttccgccttatgtcattttcagtgacagaaccctttgggaaatggtc
cgcttcaaaccacggacattgcaggatatggcatcaatcaacggggttggcgtcaagaaa
ctcgaccagtacggtcttgttttccttgatgtcatggatggtcggcgctga
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