Thalassospira xiamenensis: TH3_16440
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Entry
TH3_16440 CDS
T03639
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
txi
Thalassospira xiamenensis
Pathway
txi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
txi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TH3_16440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
txi03400
]
TH3_16440
DNA repair and recombination proteins [BR:
txi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TH3_16440
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TH3_16440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
P-loop_SecA
DUF87
eIF3_p135
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AJD53390
UniProt:
A0AB72UGS4
LinkDB
All DBs
Position
complement(3597328..3599478)
Genome browser
AA seq
716 aa
AA seq
DB search
MNAPIHDGLPEFLLKRRPPVAGSREFKLVTDYQPAGDQPKAIAELMEGITREERDQVLLG
VTGSGKTFTMANIIAKTQRPALVLAPNKTLAAQLYSEMKAFFPENAVEYFVSYYDYYQPE
AYIPRSDTYIEKDSSINEQIDRMRHAATRAILERNDCIIVASVSCIYGIGAVETYLEMTQ
RIAVGDEVDRNLIMKRLVELQYTRNDAAFSRGTFRVRGDVLEIFPAHAEDRAWRVSMFGD
EVEELAEFDPLTGNKFATMDSVTVYANSHHVTPRPTLVQAMTGIKQELKDRLAQFQQEGK
LLAAERIEQRTMFDLEMMETVGHCKGIENYSRWLSGRNPGEPPPTLFEYLPENALLFVDE
SHVAVPQIGGMFRGDYNRKFTLAEHGFRLPSCVDNRPLKFEEWEAMRPQSVFVSATPGNW
EMERTGGVFTEQVIRPTGLIDPVCIIRPVETQVDDLLAEAKACAAKGQRVLVTTLTKRMA
EDLTEYLHEHGVRVRYLHSDIDTLERIEIIRDLRLGVFDVLVGINLLREGLDIPECALVA
ILDADKEGFLRSKTSLVQTIGRAARNIDGRVLLYADKMTDSLEYAIGETNRRREKQIAYN
EANGITPESVRSKIRDVLESVAEHDYVTVDTGVSGDVLIGHNLRAHIEDLEKRMREAAGN
LEFEEAARLRDEIKRLEDQELGLADAGPMARSVGTVGPGSKSANKSKYKGRRRSGP
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgccgatacatgacggcttgccggaattcttgctgaaacgccgcccgccggtt
gcgggatcgcgggaattcaaactggtgacggattaccagcccgctggtgatcagccaaag
gcgattgccgagctgatggaggggatcactcgcgaagagcgcgatcaggtgctgctgggt
gtgaccgggtcgggcaagacctttaccatggccaacatcatcgcaaagacgcagcgcccg
gcacttgttctggccccgaacaaaacgctggcggcacagctttattcggaaatgaaggcg
tttttcccggaaaacgcggtcgagtatttcgtatcctattacgactattaccagcccgaa
gcctatatcccacgctcggacacctatatcgaaaaagacagttcgatcaacgaacagatt
gaccggatgcgccatgcggcaacgcgcgcgattctggagcgcaatgactgtatcatcgtg
gcgtctgtttcctgcatttatggtatcggtgcggtcgagacctaccttgagatgacacaa
cgaattgcggttggcgatgaggttgaccgtaacctgatcatgaagcggctggtcgagtta
caatatacccgcaacgacgccgcattttcgcgcggaacattccgggtgcgtggtgacgtt
ctggaaatcttcccggcccacgccgaagaccgggcatggcgtgtttccatgtttggtgac
gaggtcgaggaactggcggagtttgacccgctgaccgggaacaaatttgccaccatggac
tcggtgaccgtctatgccaattcgcaccatgtcacaccgcgtccgacactggtgcaggcg
atgaccggcatcaaacaggaattgaaagaccggctggcgcagttccagcaggaaggaaaa
cttctggcggccgagcgtatcgaacagcgcacgatgttcgatctggaaatgatggaaacg
gtcgggcattgcaaagggattgaaaactattcccgctggctttcgggacgcaatccgggt
gaaccaccgccgacattgtttgaatatctgccggaaaatgcgttgctgtttgtcgatgaa
agtcacgttgccgtgccgcagatcggcggcatgttcagaggtgactataatcgcaaattc
accctggccgaacatggcttccgcctgccgagttgcgtggataaccgtccgcttaaattc
gaggaatgggaagccatgcgcccgcaaagcgtgtttgtgtcagcaacgccgggcaattgg
gaaatggaacgcacgggcggtgtattcaccgaacaggtcattcgcccgaccggcttgatt
gatcctgtttgcatcattcgtccggtggaaacacaggtcgatgatctgctggctgaggca
aaggcctgtgccgccaaggggcagcgtgttctggtcacgacgctgaccaaacgcatggcc
gaggatctgaccgaatatctgcatgagcatggggtgcgggtccgttacctgcattcggat
atcgacacactggaacggatcgaaatcattcgcgatctgcggcttggcgtgtttgatgtt
ctggtcggcatcaaccttttacgcgaaggtctggatattccggaatgtgcgcttgttgcc
attctggatgcggacaaggaaggtttccttcggtctaaaacatcgctggtgcagaccatc
gggcgtgcggcgcgtaacattgatggccgggtattgctctatgccgacaagatgaccgac
agtctggaatatgcgattggcgaaaccaaccgccgccgcgaaaaacagattgcctataac
gaagccaatggcatcacgccagaatcggtgcgcagcaaaatccgcgatgttctggaaagc
gttgccgagcatgattacgtcacggtcgataccggcgtttcgggtgatgtcctgatcggg
cacaatctccgtgcgcatatcgaagaccttgaaaaacgcatgcgtgaagccgctggaaac
cttgaattcgaggaagcagcccgcctgcgtgacgagatcaagcgccttgaagatcaggaa
cttggccttgccgatgccgggccgatggcacgcagtgtcggaaccgtcgggccggggtca
aaatcggccaacaagtcgaaatacaaggggcgtcggcgcagcggaccttga
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