Thermoanaerobacterium xylanolyticum: Thexy_0119
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Entry
Thexy_0119 CDS
T01505
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
txy
Thermoanaerobacterium xylanolyticum
Pathway
txy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
txy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thexy_0119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
txy03019
]
Thexy_0119
03009 Ribosome biogenesis [BR:
txy03009
]
Thexy_0119
Enzymes [BR:
txy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thexy_0119
Messenger RNA biogenesis [BR:
txy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thexy_0119
Ribosome biogenesis [BR:
txy03009
]
Prokaryotic type
rRNA helicases
Thexy_0119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Ins_allergen_rp
Motif
Other DBs
NCBI-ProteinID:
AEF16182
UniProt:
F6BFA4
LinkDB
All DBs
Position
127948..129489
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AA seq
513 aa
AA seq
DB search
MDFKELHLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII
NNFSSNDGKVFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGV
DIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKERQTMMF
SATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEP
SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVA
ARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIEKATR
CKIKRKELPTVDDILEVKYNKMIAEIKKTLEKNDYKRFVPLAMELDEEYNLVDVAAALMD
MYYGEDVYRNDIERDYLRLFINLGRKDKFNKRTAIKLFSDCRISKNDIQDIDIFEKFSFV
NVAKSVAKNIIDQLSGKIIDGKRINVEISKPRN
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaggaactacatttaaatgaaaaaattttaaaagctatcgacgatatggga
ttcgaggagccatccaaaatacagtcggaagtaatacctgttttgttagaaggtttagat
gtaataggacaggcagagacaggtaccggcaagacgctggcgtacggtgcacctatcata
aacaattttagttcaaatgatgggaaagtgttttgccttgttttgactcctactagggag
ctcgcaatacaagtaaatgatgaattggcccgcattgggaagtattctaaagtgagattg
cttcctgtctatggtggcgtgcaaatagataggcagattaaagcaataaaaagaggtgta
gacatcgttgtaggtacgcctgggagagttttggaccttataaagaggaatgtgcttgac
ttaaagagtgtaaggtaccttgtcatagatgaagcagatgaaatgatggatatggggttt
atagacgatattaaagaaattataaaccatacaaataaagaaagacagacaatgatgttt
tctgctacgatgccagatgaaataaaaaatcttgcaaagaaatacatgaaaagcgatgcg
aaatttatttctatcgtaaaaaagactatgactgtttcaacagtccagcatttttattac
gaggtaaaaaaccaagaaaggtttgaatctctttgcagaatattagatgttgaggagccg
tcaagcacgataattttctgcaagacaaaaaaagaagttgatgagcttacagaaaatatg
cagtcaagaggatacaatgttgagggaatgcacggcgatatgagccaaaatcaaaggata
aatacgcttaggaaattcaaagaaggtattttggatttcttggtagcgactgatgtagca
gcaagaggcatagatattgagaatgtgacacatgtcataaattacaatctgccacaagat
gtagaatcgtacgttcacaggattggcaggacgggaagagcaaatagaagcggtgttgct
tatacattagtaacatcaagggaatatccagcattgaagaggatagaaaaagctacacga
tgcaaaataaagcgaaaagaactgccaactgtagatgacatattggaagtcaagtacaat
aaaatgatagctgaaatcaaaaagacattggagaaaaatgattataaacggtttgtgcca
ttggcaatggagcttgacgaagaatacaatcttgtagatgttgcggcagctttgatggat
atgtattatggggaagatgtatatagaaatgatattgaacgggattatttaaggctgttt
atcaatttaggaagaaaagacaaattcaataagaggacggcaattaagcttttttcagat
tgccgcatctcaaaaaatgatatacaggatatagacatatttgaaaaattttcgtttgta
aatgtggctaaaagcgttgcaaagaatataattgaccaattatctggtaagataatcgat
ggtaaaagaataaacgtagagatttcaaagcccagaaactaa
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