Thermoanaerobacterium xylanolyticum: Thexy_1418
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Entry
Thexy_1418 CDS
T01505
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
txy
Thermoanaerobacterium xylanolyticum
Pathway
txy03410
Base excision repair
txy03430
Mismatch repair
txy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
txy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Thexy_1418
03430 Mismatch repair
Thexy_1418
03440 Homologous recombination
Thexy_1418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
txy03400
]
Thexy_1418
DNA repair and recombination proteins [BR:
txy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Thexy_1418
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Thexy_1418
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thexy_1418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
AEF17451
UniProt:
F6BGI9
LinkDB
All DBs
Position
complement(1474226..1476679)
Genome browser
AA seq
817 aa
AA seq
DB search
MVYNWVSKKAKNDKLVDEIANKFNLKTYVAQTIVNRGYDDLKKVYEYLNPTLNALNNPYL
LEGIEKAVSIIKYHIGLNDKIAIYGDYDVDGITSTSILYIALKRLGANVDFYIPDRLLEG
YGINMDAVKILCDSGTKLIITVDCGIASLKEVQYARKLGLDVIITDHHQVPDILPEANCI
VNPHIKDCAYPYRELAGVGVAFKLCLALLGDEALEFLDVVALGTVADIVPLTGENRVIVK
EGLKMMRNTKNKGLRALINSAGLNKRDIDTYHVGFILAPRLNAAGRLESAVLCVNLLVTD
DPIEADRIAAYLNSENAKRQEIEKKILEEAIMQVENNVDLEKEKFIVLYSENWHPGVIGI
VSSRITERYHRPSILISVSGGFGKGSGRSIKGFNIYEAIKYAGDCLINFGGHEMAAGLTI
DSSQIDDFRFKLNEYAKTKLTAFDMMPIIEIETSIDDVLDCDGANQVSLLEPFGSGNPVP
MYAIKNLVVKQISLFGDNKHIRIMVEKNDVMYNVVLFNRACEFDKISTGAVLDIAGFVKV
NEWNGEKKLEIIAKDILVKEKNVLFFRNLYNTLMSFNDDFQGLESYNFIDMRNIDDKRSY
VLKLFKSDDSTAVIINTRYHIKELINYLNACNYCNFKLSNKIVDAKNAVLWCINADEIMH
LPSKFKNIVFYDIPFDSKMFYNILANSGESIVHLLFGKEDLKSSLNDIYNIVPRRSDFAK
IFVSMKENSDTLILKDQIYDYFNLNSIKSMICLKILKDNGLINIEESDNIFVLRRNCVDS
KVNIKDHQLLQKLYMAEKSFIKFAFQILKKNVKEETA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggtctacaactgggtatcaaaaaaggctaaaaatgataaacttgttgatgaaattgca
aataagtttaatttaaaaacttatgtcgcacagacaattgtcaatagaggatatgatgat
ttgaaaaaagtttatgaatatttaaacccaacattaaacgcgcttaataatccttattta
ttggaaggaatagaaaaagcggtttcaatcataaaatatcatatcggattaaatgacaaa
atagcgatatatggtgattacgatgtggatggtataaccagcacttcaattttatatatt
gcattaaaaaggcttggtgcaaatgtagatttttacataccagatcgcctcttggaaggt
tatggaataaacatggatgctgttaaaatattgtgcgattccggaacaaagcttattata
actgttgattgcgggatagcgtcattaaaggaagtacagtatgcacgaaaactgggcctt
gatgttattattacagaccatcatcaagttccggatatactgccagaagctaattgtatc
gtaaatccacatattaaagattgtgcatatccatatagagaattagcaggtgttggagtt
gcttttaagctttgtttggcactattaggggatgaagcattggaatttcttgatgtagta
gctttaggaacggtagcagatatagtaccgcttactggagagaatcgtgtgatagtaaaa
gaaggattaaagatgatgagaaatacaaaaaacaaaggattaagggctttgataaattct
gccggccttaataaaagagatatagatacgtaccatgttggattcatattggctcccagg
ttaaatgctgcaggaagattagaaagtgccgtattgtgtgtgaatttgttagtaacagat
gatcctatagaagctgacagaatagcggcttatttaaatagcgagaatgcgaaaagacaa
gaaatagagaaaaagatattagaggaagctattatgcaagttgaaaataatgtggactta
gaaaaagaaaagtttattgttctttatagcgaaaattggcatccgggtgtaattgggata
gtttcttcaaggataacagaaagatatcatagaccgtccattttaataagtgtcagtggt
ggttttggcaagggttcaggaagaagtataaaaggatttaatatatacgaggcaataaaa
tatgctggtgactgtttgattaactttggagggcatgaaatggctgcaggcttgactata
gatagcagtcaaatagatgattttagatttaaactcaatgaatatgctaagacgaaatta
actgcttttgatatgatgccgataatcgagatagaaacttctattgatgatgtattggat
tgtgatggagcaaatcaagtaagtttgttagagccttttggcagtggaaatcctgtgcca
atgtatgcgattaaaaatttggttgtaaaacaaatttctctctttggagataacaaacac
attcgaataatggttgagaaaaatgatgttatgtacaatgtcgttttattcaatagagct
tgcgaatttgacaagattagcacaggagcagttttagatattgcaggttttgtcaaagta
aacgagtggaatggagagaaaaagcttgagataatagcaaaagatattttagtgaaagag
aaaaatgtattatttttcagaaatttatacaatactttaatgagctttaacgatgatttt
caaggattagaaagctataattttattgatatgcgaaatatcgatgataaaagatcttat
gttttaaaattgtttaaaagtgatgatagtacagcagtcataataaacactcgatatcat
ataaaagagcttattaattatcttaatgcttgcaactattgtaattttaagttaagcaat
aaaattgtcgatgcaaagaatgcagttttgtggtgcattaatgctgatgaaattatgcat
ttgccttctaagtttaaaaatatagttttttacgatataccattcgattcaaaaatgttt
tataatatattagcaaacagcggagaaagtattgtacaccttttgtttggaaaggaagac
ttaaaaagcagtttaaatgatatctacaatattgtacccagaaggagtgattttgctaaa
atatttgtaagcatgaaagaaaattcagatacgttgatattaaaagatcaaatttacgat
tattttaatttgaattccataaagtcaatgatatgtttaaaaattcttaaagacaatgga
ttgattaatatagaagaaagtgataatatttttgtgttaaggagaaattgtgtcgattca
aaagtgaatattaaagatcaccagctattacaaaaactgtatatggcggaaaaaagtttt
ataaaatttgcttttcaaatattgaaaaagaatgttaaggaggaaacagcatga
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