Tuanshanicoccus yangjingiae: JDW14_00840
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Entry
JDW14_00840 CDS
T11391
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tya Tuanshanicoccus yangjingiae
Pathway
tya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDW14_00840 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tya03021
]
JDW14_00840 (rho)
03019 Messenger RNA biogenesis [BR:
tya03019
]
JDW14_00840 (rho)
Transcription machinery [BR:
tya03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JDW14_00840 (rho)
Messenger RNA biogenesis [BR:
tya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JDW14_00840 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQD65708
LinkDB
All DBs
Position
154297..155610
Genome browser
AA seq
437 aa
AA seq
DB search
MSDAFSLETLLNSEVKQLYAYARELEIPNYSQLSKKELALAVMRTQEEKQGFYYVEGVLD
IIPSEGYGFLRPINFSPSHEDIYISSSQIRRFELRNGDKVAGPARPPKASERYSGLMQVS
SVNGKDPEEAKNRDHFPSLTAIYPDRQIQLEYDAKKTANRMIDLIAPIGFGQRGIIVSPP
KAGKTTVLKELANGIKANYPDTELIVLLIDERPEEVTDIERSVDGEVVYSTFDQRPENHV
RITELVLERAMRLVEDGRDVIILMDSMTRLARAYNLVVKPSGRTLSGGVDPAAFYLPKRF
FGAARNVENGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLSRQWAERRLFPAVDI
LRSGTRKEELLMPKEKLEQIWRLRNLMGEDVYSYTQQVIELLGRTDTNEAAFVQLEAFLE
AVSPTKKMTKRTTRKSV
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgcattctcactagaaacattattaaacagtgaagtaaaacaattatatgct
tacgcaagagaattagaaattccaaattatagtcaattgagtaaaaaggaattagcctta
gccgtcatgcgtacgcaagaggaaaaacaaggtttctattatgttgaaggtgtattggat
attattccgagtgaggggtatggctttttaagaccgattaacttctcgccaagtcatgaa
gatatttatatttcaagttctcaaatacggcgctttgaattaagaaatggagataaagta
gctgggcctgctcgtccaccgaaagcgagcgagcgatactctggcttgatgcaagtgagt
tcggttaatggtaaagaccctgaagaagctaaaaatcgtgaccatttcccaagtttgaca
gccatttatccagaccggcaaatacaattggagtatgatgcgaaaaagactgctaatcgt
atgattgatttaattgcacctattggctttggacaacgtgggattattgtttcaccccct
aaagctggtaaaacaacagtattaaaagaactagcgaatgggattaaagcgaattaccca
gatactgaattaattgtattattaattgacgaacgtccggaagaagtaaccgatattgaa
cgtagtgtggacggcgaagtggtgtattcaacctttgaccaacggccagaaaatcatgtg
cgtatcacagaattagtattggaacgtgcgatgcgattagttgaagacggtcgagatgtc
attatcttaatggatagtatgacacgtttggctcgtgcatataacttagtagttaagccg
agtgggcgtacattaagtgggggggttgacccagctgctttctacttgcctaagcgtttc
tttggtgcagcacggaatgttgaaaatggtggctcgttgacgattttagcgactgcctta
gttgatacagggagccgtatggacgatgttatctatgaagaattcaaagggacaggtaat
atggaactgcatttatcacgtcaatgggcagaacgtcgtttgttcccagctgtagatatc
ttacgttccggcacacgaaaagaagagttgttaatgccgaaagaaaaattggaacaaatt
tggcgtctgcgtaatttaatgggtgaagatgtatatagttacacacaacaggtgattgaa
ctattgggtcgtacggatactaatgaggcagcttttgttcagcttgaagcctttttagaa
gctgtctcaccgacgaaaaaaatgacgaaacgcacgacaagaaagagtgtgtag
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