Tuanshanicoccus yangjingiae: JDW14_08685
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Entry
JDW14_08685 CDS
T11391
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tya Tuanshanicoccus yangjingiae
Pathway
tya03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tya00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JDW14_08685 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tya03021
]
JDW14_08685 (rpoC)
03400 DNA repair and recombination proteins [BR:
tya03400
]
JDW14_08685 (rpoC)
Enzymes [BR:
tya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JDW14_08685 (rpoC)
Transcription machinery [BR:
tya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JDW14_08685 (rpoC)
DNA repair and recombination proteins [BR:
tya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JDW14_08685 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QQD65358
LinkDB
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Position
complement(1854104..1857751)
Genome browser
AA seq
1215 aa
AA seq
DB search
MIDVNNFEAMQIGLASAEKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
SCGKLKRVRYKGRVCDRCGVEVTKAKVRRERMGHIELAAPVTHVWYFKGIPSRMGLVLDV
SPRYLEEVIYFASYIVIDAGDTPLEKKSLLTEAEYREKKREYGDRFYAKMGAEAIKELLE
AVDLEKEVAELKEILKTATGQKRTRAIRRLDILDAFRESGNKPSWMVMDVLPVIPPDIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRAVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVEREIAANIKNAKRMIETQDDAIWPVIEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCEAFNADFDGDQMAVHVPLSEEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEEPGRVGEGLVLSSVGEAEIAYQSGYAHLHTRVAIP
AKALAGKPFTEWQKSRLMVTTVGKLLFNEIMPLEFPYLNEPTNENLTVQTPDKYFLEPGT
DVKAAIAAMDMVPPFKKKDFGNIIAEVFKRFHITETSVMLDKLKNLGYKYSTRAGITVGV
ADVLRLESKAGILEEAHKRVDNITKQYRRGLITEDERYESVIRTWEQAKDKVQEDLKNSL
PRLNPIHMMSDSGARGNISNFTQLAGMRGNMAAPSGKIIELPITSNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDKGIEITEIADGNSVIESLE
ERLIGRYTQKTVRHPQSGEVIIGADQLITEDKAAEIVAAGVETVTIRSVFTCDTKHGVCK
HCYGRNLATGMEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGGGDITQGLPRIQEI
FEARNPKGRATITEVSGVVESIEEKANDRSKDITIVGVNDTRKYNVPYQSRLKVKEGDQV
ERGQALTEGSIDPKELLRVTDVITVEKYLLREVQSVYRGQGVEIGDKHVEVMVRQMLRKV
RVMDPASTNILPGALMDIADFTQANVEAIKAGEVPATARPVLLGITKAALETKSFISAAS
FQETTRVLTDAAIRGKKDVLLGLKENVTIGKLIPAGTGMARYRKIKSNLEVPVDTVLASD
MTAFETETEVETPTV
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgttaataattttgaagcaatgcaaatcggattagcgtctgcggaaaaaatt
cgtagttggtcgtatggtgaagtaaaaaaaccggaaaccattaactatcgtacattaaag
ccggaacgtgacggtttgttctgtgaaagaattttcggaccaacaaaagattgggaatgt
agttgtggtaaattaaaacgagttcgctataaaggtcgtgtttgtgatcgctgtggtgtt
gaagtaacgaaagcaaaagtgcgtcgtgaacgtatgggacatattgaattagctgcacct
gtgacacatgtttggtatttcaaaggaattccaagtcgtatgggtttggtattagatgtt
agcccacgttatttagaagaagtaatctattttgcctcttatattgtaattgatgcaggt
gatacaccattagaaaaaaaatcattattgacagaagcagaatatcgtgagaaaaaacgt
gagtacggcgatcgtttctatgcaaaaatgggtgcagaagccattaaagaattgttagaa
gctgttgatttagaaaaagaagttgctgaattgaaagaaattttaaaaacagcgactggt
caaaagagaacacgtgcaattcgccgtttagatattttagatgcatttagagaatctgga
aacaaaccgtcttggatggtaatggatgttttaccagttattccaccggatattcgtcca
atggttcaattagagggtggacgttttgcgacaagtgacttaaatgatttataccgtcgt
gttatcaaccgtaataaccgtttaaaacgtttattggacttaggtgcaccaagcattatt
gttcaaaacgaaaaacgtatgttacaagaagcggtcgatgcgctaattgataatggtcgt
cgtggtcgagcagtaactggaccaggaaaccgtccattgaaatcattgtcacacatgttg
aaaggaaaacaaggtcgtttccgtcaaaacttattaggtaaacgtgttgactactctgga
cgttcagtaatcgtcgtaggtccaaacttaaaaatgtaccaatgtggtttaccaaaagaa
atggcgattgaattattcaagccatttgtgatgaaagaattagttgagcgagaaatcgca
gcgaatattaaaaatgctaaacgtatgattgaaacacaagatgatgcgatttggccagta
attgaagaagtaattcgtgagcacccagtattacttaaccgagcacctactttgcaccgt
ttaggtattcaagcatttgagccgactttagtagagggacgtgcgattcgtttgcaccca
ttagtatgtgaggctttcaacgccgacttcgacggggaccaaatggccgttcacgtacca
ttgtcagaagaagcacaagctgaagctcgtttattaatgttagcagcacaaaacatcttg
aaccctaaagacggtaaaccagttgttacaccgtcacaagatatggtcttaggtaactat
tacttaacattagaagagcctggacgtgttggagagggattagtattaagtagtgttggg
gaagctgaaattgcttaccaaagtggttatgcacatttacatacacgtgtggcgattcca
gctaaagcattagccggcaaaccatttactgaatggcaaaaatcacgtttaatggtaacg
acagttggtaaattattattcaacgaaattatgccattagaattcccttacttgaatgag
ccgacaaatgaaaacttaacggttcaaacaccagataaatatttcttagaaccaggtact
gatgtaaaagcagcgattgcagcaatggatatggtgccaccatttaagaaaaaagacttt
ggtaatattatcgcagaggtcttcaaacgattccatattacagaaacatcagtcatgtta
gataagttgaaaaacttaggttacaaatattcaactcgtgctggtattacagttggggtt
gccgatgtattacgtttagaatcgaaagctggtattttagaagaagcacataaacgtgtt
gataacattacaaaacaatatcgtcgtggtttaattacggaagacgagcgttatgaaagt
gttattcgtacatgggaacaagctaaagataaagttcaagaagatctgaaaaactcatta
ccacgcttgaacccaattcatatgatgtcggattcaggtgcccgtggtaacatttcaaac
tttacccaattagctggtatgcgtggtaacatggctgccccaagtggtaagattatcgag
ttgccgattacatcaaacttccgtgagggattatctgtcttagagatgtttatctctact
cacggtgctcgtaaaggtatgacagatacggccttaaaaacagccgattcaggttactta
acacgtcgtttagttgatgtggcacaagatgtcattattcgtgaagatgactgtggaact
gataaagggattgaaatcactgaaattgcagacggcaatagcgtgattgaatcattagaa
gaacgattaattggtcgttatactcaaaaaacggttcgtcacccacaatcaggtgaagta
attatcggtgcagatcaattgattacagaagataaagcagctgagattgtagcagctggt
gttgaaacggtaacgattcgttcagtctttacatgtgatacaaaacatggtgtatgtaaa
cactgctacggacgtaacttagcgactggtatggaagttgaagttggtgaagctgttggt
acaattgcagctcaatctatcggtgaaccaggtactcagttaacaatgcgtacattccat
acgggtggggttgccggcggtggcgatattactcaaggtttaccacgtattcaagagatt
tttgaagcacgtaatccaaaaggtcgtgcgacaattactgaagtatccggtgtggttgaa
tcaatcgaagaaaaagcgaatgaccgttctaaagatattacaatcgttggtgtcaacgat
acgcgtaaatacaatgtgccttaccaatcacgcttgaaagtcaaagagggtgaccaagta
gaacgtggacaagcattaacagaagggtcaattgatccgaaagaattattacgtgtaact
gatgtgattacagttgagaaatacttattacgtgaagttcaatctgtttaccgtggacaa
ggggtagaaatcggtgataaacacgttgaggttatggttcgtcaaatgttacgtaaagta
cgtgttatggatcctgcgtcaacaaatattttaccaggtgctttaatggatattgctgac
tttacacaagcgaacgttgaagcaattaaagcaggtgaagtgccagcgactgctcgtcca
gtgttattaggtattacgaaagcagcgttagaaacgaaatcattcatttcagccgcttca
ttccaagaaacaacacgtgtcttaacagatgcagcgattcgtggtaagaaagatgtccta
ttaggattgaaagaaaatgttacaattggtaaattaattcctgctggtacaggtatggcg
agatatcgtaaaattaagtcaaatcttgaagtgccagtcgatacggtattagcaagtgac
atgactgcttttgaaacggaaacagaagtagaaacaccaactgtataa
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