Thermodesulfovibrio yellowstonii: THEYE_A1106
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Entry
THEYE_A1106 CDS
T00775
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tye
Thermodesulfovibrio yellowstonii
Pathway
tye03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THEYE_A1106 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tye03400
]
THEYE_A1106 (mfd)
Enzymes [BR:
tye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THEYE_A1106 (mfd)
DNA repair and recombination proteins [BR:
tye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
THEYE_A1106 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_16
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACI20340
UniProt:
B5YL15
LinkDB
All DBs
Position
1076977..1080105
Genome browser
AA seq
1042 aa
AA seq
DB search
MNFLSNQPSNINTALLEEVKKITSLIKTNNEIYNLSITSFSLFICFYKNNFIVFEENEDQ
AAKLYAAFKTFSSFFNTTDEIVFLPSKGTERMIAIFKILNERNKKIITTVDSAKIPPHIE
TINIKKGGTIEREFLAKNLINLGYSKVELVTQEGEFSEHGWVFDIWGIGEEYPARIEFFG
DEIEEIKLFYPDTQRSFKDKNEIWIIQAEEKEINNIELLELFEFDNIFTVDKNFTNKKFN
IVKISHLPVKFSTKSVDAGDKTFYGLGILPNERSSILDFPRNLKKLGIPIIFSISSRGKA
ETIKEVLFNHDIIAPLIHKNEIGTYSGKYAITISDLQEGFYRENLMIITDFELFGEKTLK
KKKLAIQKLPIDGLEINEGDYIVHKEHGIGIFRGIKRQKYEGTEEDVLVLEYKDGDILYV
PTWNIGKIYRYSAKEGFIPPIDKLGSNRWQKAKERERKRIHDIADKLIKLYAQRKTERGF
IYSEDTEIHKNFDDFFPYEETEDQQKAIDAILKKMREPFPMEVLLCGDAGYGKTEVAMRA
SFRAVYDGKQVAVLVPTTLLCEQHYRTFKKRFEAFPVKIEYLSRFRSEKEIKKVIEDTKL
GKVDILIGTHIIILKEVDFFDLGLLIIDEEQKFGVIHKEKIKEKYPKVDLITITATPIPR
TLQIGLSGLWDIFVIQTPPKERLAVKTFVIQENELIIKEAIEKEIQRGGQIYFLHNRIHD
IELVKSKIQKLVPMARIGVAHGRMKEKMLDKIMLDFIYGKIDILLCTSIIASGLDIPNVN
TIIIDQAQTFGLSDLYQIRGRVGRSYRQANAYLVIPPEEILSEDAKKRIKAIQEMSYLGA
GFHIALRDLEIRGAGELLGVEQSGVNRLGFDLYIEMLNEAVKEIKGEVLPALKLPEIKFS
IPAFIPEEYIKETPMRIRIYRKLSQISEDSEIEKLYDEIIDRFGMPPKEVENIFKIARIR
LLVSKIKASEVKQKKNTFKFKMEENLDTGFVNRLLHILTGFKNRGIIKNLKFYQDGFEVN
IEELDGLILFLKRLIAKVEDKK
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcctttcaaatcagccgtctaatattaatactgctttattagaagaagtaaaa
aaaatcacctccctcatcaaaactaacaatgaaatttataacctttctataacctccttt
tcattatttatttgtttttataaaaacaactttatagtatttgaagaaaatgaagaccaa
gcagctaaactttacgcggcttttaaaactttttcatcttttttcaatactactgatgaa
atagttttcttaccatctaagggcacagaaagaatgattgcaatatttaaaattctgaat
gagagaaataaaaaaataataacaacagttgattctgctaaaattcctccccatattgaa
accattaatataaaaaagggagggactattgaaagagaatttctggcaaaaaatcttatt
aacttaggatacagtaaagttgaattagttacacaggaaggagaattttctgaacatgga
tgggtatttgatatatggggaattggagaggaatatcctgcgagaattgaattctttgga
gatgaaatagaagagataaagttattttatccagatacgcaacgctcatttaaagataaa
aatgagatatggataatacaggcagaagaaaaagaaataaacaacatagagttacttgaa
ttatttgaattcgataatatttttacggttgacaaaaatttcaccaacaaaaagttcaat
atagtgaaaatatcacatttacctgttaaattttccaccaaatcagttgatgcaggagat
aaaacattttatggattgggaatattgccaaatgaaagaagctctattttagattttccc
agaaatttaaaaaaactgggaattcctataatcttttctataagttctcggggaaaagct
gaaacaataaaagaagttctttttaaccacgatatcatcgctccattaattcataaaaac
gagattggaacatattcaggcaaatatgcaataacgatatcagatcttcaggagggattt
tatagagaaaatcttatgataattacagattttgaactatttggcgagaaaacccttaag
aagaaaaaacttgccatccagaaattacctattgatggacttgaaataaatgaaggtgat
tatatagttcataaagagcatggaatagggatttttcgtggtataaaaagacagaaatac
gaagggactgaagaagatgtgcttgttttggaatataaagatggagatattctttacgtc
cctacttggaatattggaaaaatctatagatattctgcaaaagaaggttttattccaccg
attgataaactgggaagtaataggtggcagaaagcaaaagaaagagaaagaaaaagaata
catgatatagctgataaacttattaagctttatgctcagagaaaaactgagcgaggattt
atttattcagaagatactgaaattcataaaaattttgatgactttttcccctatgaagaa
actgaagaccagcaaaaggctattgatgcaatactaaaaaaaatgagggaacctttccct
atggaggtgcttctttgtggggatgctggatatgggaagacagaagttgctatgagagct
tcattcagagcggtttatgatgggaaacaagttgcagttttggtgccaacaactctttta
tgtgaacaacattacaggacatttaaaaaaagatttgaagcatttcctgtaaaaattgaa
tatttaagccgatttcgttcagaaaaggaaattaaaaaagttattgaagatacaaaattg
gggaaagttgatattctcattggcactcatataattattttgaaagaagttgattttttt
gacctcgggcttttgattattgatgaagaacagaagttcggggtaattcataaagagaaa
ataaaagaaaaatatccaaaagttgatctcattacaataactgctactcctataccaaga
actcttcaaataggattaagcggactgtgggatatattcgtaatacagactccacctaag
gaaagacttgctgttaaaacatttgtcattcaggaaaatgaattaataattaaagaggca
attgaaaaagaaattcaaagaggaggacagatttattttcttcataatagaatccacgat
atagaattagtaaaatcaaaaattcaaaaacttgttcctatggcacgaattggagttgcg
catggtagaatgaaagaaaaaatgcttgacaaaataatgcttgattttatttatgggaaa
attgatatcttactatgtacatctattatagcctcaggacttgatattccaaatgtaaat
acaattattattgatcaggctcaaacttttggattaagcgatctttatcaaataagagga
agagttggcaggtcatacaggcaggcaaatgcttatttagtcattcctcctgaagaaatt
cttagtgaagatgcaaaaaaaagaataaaagctattcaagaaatgagctatctcggagca
ggttttcatattgctttaagagaccttgaaataagaggtgcaggagagcttcttggtgtt
gaacaatcaggagtaaacagattaggttttgatctttatatagaaatgttaaatgaagct
gtcaaagaaataaaaggcgaagttttgccagcactgaaactaccagaaattaaattttct
ataccagcttttatccccgaagaatacataaaagagactcctatgagaataagaatttat
agaaaattgagtcaaatttcagaagactctgagatagaaaaactttatgatgaaattatt
gatagatttggaatgcctccaaaggaggttgaaaatatcttcaaaatcgctcgcataaga
ctccttgtttcaaaaattaaagcctcagaggttaaacaaaaaaagaatacatttaaattt
aaaatggaggaaaatcttgatacaggttttgtaaaccgcttattacatatattaacagga
tttaaaaacaggggcataataaaaaatctgaaattttatcaagatggctttgaagttaat
attgaagaacttgacggtttaattttatttcttaaaagacttattgcaaaggttgaagat
aaaaaatga
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