Thermodesulfovibrio yellowstonii: THEYE_A1346
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Entry
THEYE_A1346 CDS
T00775
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tye
Thermodesulfovibrio yellowstonii
Pathway
tye03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tye00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THEYE_A1346 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tye03021
]
THEYE_A1346 (rpoC)
03400 DNA repair and recombination proteins [BR:
tye03400
]
THEYE_A1346 (rpoC)
Enzymes [BR:
tye01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THEYE_A1346 (rpoC)
Transcription machinery [BR:
tye03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THEYE_A1346 (rpoC)
DNA repair and recombination proteins [BR:
tye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THEYE_A1346 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
BSH_YknX
Peptidase_M23
RnfC_N
Lact_bio_phlase
Motif
Other DBs
NCBI-ProteinID:
ACI21535
UniProt:
B5YFV7
LinkDB
All DBs
Position
complement(1308143..1312258)
Genome browser
AA seq
1371 aa
AA seq
DB search
MTEDIYSLFQKPKNPRDFDAIRIKLASPEKIREWSYGEVKKPETINYRTFKPEPEGLFCA
KIFGPIKDWECLCGKYKRMKHKGVICDKCGVEVIQSKVRRERMGHIELAAPVAHIWFVRG
VPSKMGLLLDLSVRQLERVIYYEDYIVIDPGDTPLKEKDILTEDEYKKCISQYGNKFKAG
MGAEAVRELLKKIDLDIVAQELKEKIEAATSTGIKRKLTKRLKVIEAFKNSGNRPEWMIL
DIVPVLPPELRPLVPLDGGRFASSDLNDLYRRVINRNNRLKRLMELKAPSVIIRNEKRML
QESVDTLFDNTKRSKALKAGTRRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELDMHQCGLPKSMALELFKPFVFNKLEEKGYATTIKQAKRLVEQERSEVWDALEEVIQEH
PVLLNRAPTLHRLGIQAFDPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHVPLSYEAQVE
ARVLMMSVGNLLSPANGKPIVVPTQDMVLGIYYLTKEKHDAKGAGKVFSDPEEVILAYQC
KAVEKHAPIKVKLNGEFVNTTVGRILFREIVPEGVPFQMINKELTKKELGKLIEYIHYNF
GKRDTVLFLNKLEKLGFEVATQSGISICIDDMHIPSKKTELIKEAEAQVMEVQRQYAEGL
ITQGERYNKVIDIWANVTERVADEMMKELGAERGKEFTPEELAERRSFNSIFMMADSGAR
GSIAQIRQLAGMRGLMAKPSGEIIETPITANFREGLTPLQYFISTHGARKGLADTALKTA
NAGYLTRRLVDVAQDIFLIEHDCGTKDGIYITALIEGGEIVMPLEERIYGRTLAEDIKDP
LTGEIIAKRDTVIDQALAKKIVDSGIDRLKIRSVLTCRTKFGVCSKCYGMDLARSEPVEI
GEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKIVEQAVLEAKGSGTVRFKNIHYVERKDG
SLVVLNRNAMIVITDSSGREREKYNLVYGAKIIVKEGQIVESGQRLAEWDAYTTPIITEI
GGKIALGDMVEGVTFKEETDPTTGLSHKIIIDYPATYRPRVTIKDKDGKTAKLPSGTAAR
YLLPAGAILVVDKGDIVEPGDILAKIPRETIKTKDITGGLPRVAELFEARRPREAAIVSE
IDGIVEFKGSQKGSRVIVVRGADETREYLIPKGKHVIVHDGDWVKAGEPLIDGSINPHSI
LEILGPTELQRYLVDEIQKVYRLQGVSIHDKHIEVIVRQMMKKVRIEDPGDTSFLIGDEV
DRFIFIEENEKVIARGGRPAQARPLLLGITKAALSTESWVSAASFQETTRVLTDAAIEAR
IDELRGLKENVIMGRIIPAGTGSPVYKDTLIKGEFYSMQIEHFSEESIEEN
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
ttgacagaagatatttattcactttttcaaaaacctaaaaatccgagagattttgatgct
ataagaataaagcttgcttcgcctgaaaagataagggaatggtcatatggagaagtaaag
aagcctgaaacaatcaattatagaacatttaagccagaaccagaagggcttttttgtgct
aaaatttttggtcctataaaagattgggaatgtttgtgtggtaaatataaacgaatgaag
cataaaggtgttatatgtgacaaatgcggagttgaggtaattcagagtaaagtaagaaga
gaaagaatggggcatattgaacttgctgcaccggtagcacatatatggtttgtcagagga
gtcccaagtaaaatgggattactgcttgacctttctgttagacagcttgagagagttatt
tactatgaagactatattgttatagacccaggagatacacctttaaaggaaaaagatatt
ctcacagaagatgaatacaagaaatgtatttctcagtacggaaacaaattcaaagcaggc
atgggagcagaagctgtaagagaacttcttaaaaaaattgatcttgatatagttgcacaa
gaacttaaagaaaaaatagaagctgcaacttccacaggtattaaaagaaagcttacaaaa
agacttaaagttattgaagcatttaaaaattcaggaaatcgtcctgaatggatgattctt
gatattgttccagttcttccaccagaactaagacctcttgttccccttgatggcggaaga
tttgcttcttcggatttaaatgacctttacagaagagttataaacagaaataacagactt
aaaagactcatggaacttaaagctccaagtgtaattatcagaaatgaaaaaagaatgctt
caggaatcagttgacacgctttttgataatacaaaacgttccaaagctttaaaagcagga
actcgcagaccccttaaatctttaagcgacatgataaagggtaagcagggaaggttcaga
cagaatcttcttggtaaaagggttgattattctggtaggtcagttattgtagttggtcct
gaacttgatatgcatcaatgtggattgcctaagtctatggcactggaactatttaaacca
tttgtttttaataagcttgaagaaaaaggatatgcaacaacaataaaacaggcaaaaaga
cttgttgaacaagaacgttcagaagtctgggatgcccttgaagaagtaattcaggaacat
cctgttttgcttaaccgtgcaccaactcttcataggcttggaattcaagcttttgaccct
gttcttgtagaaggaaaagcaataaaacttcatcctcttgtatgcacagcctttaatgca
gattttgatggtgatcagatggcggttcatgttcctctttcatatgaagctcaagttgaa
gcaagagtattgatgatgtctgttggaaatcttctctctcctgctaatggaaaaccgata
gttgttccaacacaggatatggttcttggaatttactatcttacaaaagaaaagcacgat
gcaaagggagcgggcaaagttttttcagaccctgaagaagttattcttgcctatcagtgc
aaagctgtagaaaaacatgctcctataaaggtcaagctgaacggagagtttgtaaatact
acagtaggaagaattttattcagagaaattgttccagaaggtgttccatttcagatgatt
aataaagaactgacaaaaaaagaacttggcaaactgattgaatatattcattataatttt
ggaaaaagagatacagttttatttttgaataaacttgaaaagttaggttttgaagttgct
acccagtcaggtatttccatatgtattgatgatatgcatataccttcaaagaagactgaa
ttgattaaagaagcagaagctcaagtaatggaagtccagagacagtatgctgaaggattg
attacacagggtgaaagatacaataaagtcatagatatctgggcaaatgtgacagaaaga
gttgctgatgagatgatgaaagaacttggagcagaaagaggtaaagagtttactccagaa
gaacttgcagagagaaggtcttttaatagcatatttatgatggctgactctggtgctcgt
ggtagtattgcacagattagacagcttgctggtatgagaggacttatggcaaagccatct
ggcgaaattatagaaaccccaattacagctaattttagagaaggacttactccactgcaa
tactttatatccacacatggtgcccgaaaaggtctggcagatacagctttaaaaacagca
aatgctggatatctaacaagaagacttgttgatgttgcacaggacatatttcttatagaa
catgattgtggaacaaaagacgggatatatattacagcccttatagaaggtggagaaata
gtaatgcctcttgaagaaaggatatatggaagaacactggcagaagacataaaagatcca
cttacaggcgaaataatcgcaaaaagggatactgtaatagaccaggcacttgctaagaag
attgtagattcaggaattgatagattaaaaattcgttcagtgcttacatgtagaacaaaa
tttggtgtttgctcaaaatgttatggaatggatcttgccagaagtgaacctgttgaaata
ggagaagcaattggagttattgctgcgcagtctattggagaaccaggtacacagctcaca
atgagaacatttcatatcggaggagcagctacaaagatagttgaacaggctgtgcttgag
gctaagggttcaggaacagtaagatttaaaaatatccattatgtagaaagaaaagatggt
tctcttgttgttcttaatagaaatgctatgattgttatcacagattcttctggaagggag
agggaaaaatataatctcgtatacggagctaaaattattgttaaagaaggacagattgtt
gaatcaggtcagagactggctgagtgggatgcttatacaacaccgattattactgaaata
ggtggtaaaatagctcttggtgatatggtagaaggagtaacatttaaggaagaaactgat
ccaacaacgggtctttcacacaaaataataattgattatccagcaacttatagaccccgt
gttacgataaaagataaggatggtaaaacagcaaaacttccttcaggaacagctgcaaga
tatcttctgccagcaggtgcaattttggtagttgataaaggagatattgtagaaccagga
gatattttagcaaaaatcccaagagaaacaattaaaacaaaggatataacaggtggactt
ccaagagtagcagaactttttgaagcaagaagacccagagaagcagctattgtcagtgaa
atagatggaatagttgagtttaaaggaagccagaagggctcaagagttatagttgttaga
ggagctgatgaaacaagagagtatcttattccaaaaggtaaacatgtcatagttcatgat
ggagattgggtgaaagcaggcgaacctttgatagatggttctattaatccgcacagtata
cttgagatattaggtccgacagaactacaaagatatcttgtggatgaaattcagaaagtt
tacagacttcagggagtttcaatacatgataaacatattgaggttattgtcagacaaatg
atgaaaaaagtaagaatagaagaccctggtgatacatcttttctgataggtgatgaggtt
gatagatttatatttattgaggaaaatgagaaagttatagctcgtggaggtagacctgct
caggcaagacctcttttacttggaattactaaggcagctctttcaactgaatcttgggta
tcggcagcttcattccaggaaactacaagggttcttactgatgcagcaattgaggcaagg
attgatgaattaagaggattaaaagagaatgtgataatgggaagaattattccagctgga
acaggttctccagtatataaagatacattgataaaaggtgagttttacagtatgcagata
gagcatttcagcgaagaaagtattgaagaaaattga
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