Thermodesulfovibrio yellowstonii: THEYE_A1347
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Entry
THEYE_A1347 CDS
T00775
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tye
Thermodesulfovibrio yellowstonii
Pathway
tye03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tye00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THEYE_A1347 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tye03021
]
THEYE_A1347 (rpoB)
03400 DNA repair and recombination proteins [BR:
tye03400
]
THEYE_A1347 (rpoB)
Enzymes [BR:
tye01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THEYE_A1347 (rpoB)
Transcription machinery [BR:
tye03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THEYE_A1347 (rpoB)
DNA repair and recombination proteins [BR:
tye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THEYE_A1347 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF1820
DUF6138
Motif
Other DBs
NCBI-ProteinID:
ACI21929
UniProt:
B5YFV8
LinkDB
All DBs
Position
complement(1312290..1316228)
Genome browser
AA seq
1312 aa
AA seq
DB search
MIKPLRERINFGKVPPLVEVPYLLEFQRKSFDKFLQKDIPPEERADEGLQSALNSVFPIS
DYNGTTTIEFISYSVGEPKLTPYECMVKGLTYSVPIKMKVRLNIWDKDEEGRKFLKESRE
QEVFLGDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPV
RGSWLDFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLRIFYPIEEIRIKDETTYT
RVVSDILTGVRTKVDICSADGKDIIVKEGSKITRYSLKKMKELGIQEIPISKSEIIGRIT
LSDIVDPETGEVIVDSNKEITEESFHRIISARIQKLELLFIDNINYLPSLRETLLTDKVE
NKKHALREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSSVGRLKLNQKLGLDIPLDV
RVLTDKDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIRE
KMTITDVETAMPHDVINTKPVMAAVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGG
LTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINDFGFIESPYRKVVNG
KVTNDVHFLSALESENYVIAEATTPVDEEGNIIGETVSARVKGDFKMVSREEVEYMDVSP
KQIVSLSASLIPFLENDDANRALMGSNMQRQAVPLIHTEAPIVGTGMELYAARDSGWLVV
AKRAGIVENVDSRRIVIRVTEEGGGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVERGTI
LADGPCMDNGELALGRNVLVAFMPWGGYNFEDAILVSERLVKEDVYTSIHIDEFEIECRD
TKLGPEEITREIPNVNEELLKNLDEDGIIRIGAKVKAGDILVGKVTPKGERVLTPEEKLL
YAIFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRANAIEEEEIKRIERDRED
EIRILKETKASRIRKILKGKIILEDVKKGEKIICPKGKALTEKVVNLLDVNQLLKLKVED
PDVKAEVSRVNKEVEQNIKQIYAKYNEKIERIKKGDELPPGVNQIVKVYIAMKRKIQVGD
KMAGRHGNKGVVSMILPEEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKAL
GLYVASPVFEGAKEDEIKEMFRKVGYPTTGQVTLYDGKTGEPFERPVTVGYMYMLKLHHL
VADKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDI
TGRTRMYEAIVKGHPVLEPGVPESFNVLIKELQSLCLDVDLLEKKKKVERFQ
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgataaagcctttaagagagagaataaactttggaaaggtgcctccacttgtggaggtg
ccttatcttttagagtttcagagaaaatcttttgataagtttcttcaaaaagatattcca
ccagaggaaagagccgatgagggtcttcagtctgctttaaacagtgtttttcctataagt
gattacaacggaacaactacaatagaatttatttcatactcagttggagaaccaaaatta
actccctatgaatgcatggttaagggtcttacttattcagtcccaataaaaatgaaagtt
cggttaaatatatgggacaaagatgaagaagggagaaagtttcttaaagaatccagagaa
caagaagtttttcttggcgaccttcccatgatgactgagacagggagctttataataaat
ggagttgaaagagttattgtaagtcagttgcacagatcccctggtgtttattttgcacct
gatagaagtaaaagcagaataagtggaagatttctttattcagcaaggattatacctgtt
agaggctcatggcttgattttgagtttgattcaaaagaccttctttatgtaagaattgat
aaaaggaaaaaacttccagccacaattgttcttaaggcacttggatatacaaatgaagat
ttattaagaattttctatcccatagaagaaataagaattaaagatgaaaccacctataca
agagttgtgagtgatatattgacaggagttagaacaaaagttgacatctgcagtgctgat
gggaaagatatcatagtaaaagaaggaagtaagattacaagatactcactaaagaaaatg
aaagaacttggaattcaggaaataccaatttctaaaagtgaaataataggcaggataact
ctttcagatattgttgaccctgaaacaggtgaagtaatagttgatagtaataaagagatt
acagaagaatcctttcatagaattatatctgccagaattcaaaaattagaactgcttttc
atagataatattaactatcttccatctttacgtgaaacattgctaactgacaaagttgag
aataaaaagcatgccttaagagaaatatataagaaattgaggcctggagaaccagctact
gaagaagcagctgaagaacttttttatggtttgttttttgatcctaaaagatatgacctt
tcttctgtaggaagacttaaattaaatcaaaaattaggacttgatattcctcttgatgtt
agggttcttactgacaaagatattattgaaattgttaaatatttactcaatctcagaaca
ggcaagggagaggttgatgatattgatcatcttgggaacagaagagtaagaggagttggt
gaactcttagaaaaccagttccgcatcggattagtaagaatggaaagggcaatcagagag
aaaatgaccataacagatgttgagacagcaatgccccatgatgtaataaatacaaaacct
gtaatggcagctgtcaaagagtttttcagcaccagccagttaagtcaatttatggatcag
actaatccactaagcgaaattacacacaaaagaagattgagtgctcttggaccaggagga
cttacccgcgaaagagcaggatttgaggtcagagacgttcatccaactcattatggaaga
atatgtcctattgagactccagaaggacccaatatcggtctaataacttctcttgcaact
tatgcaagaatcaatgattttggttttatagaatctccttacagaaaagttgttaatgga
aaagtgacaaatgatgtgcattttttaagcgctcttgaaagtgaaaactatgttattgca
gaagcaacaactcctgttgatgaagagggaaatattatcggagagactgtttcagcacgg
gttaagggtgattttaaaatggtatcccgcgaggaagtagaatacatggatgtatctccg
aaacagatagttagcttatctgcttctttaattccatttcttgaaaacgatgatgcaaac
agagctttaatgggatcaaatatgcagagacaggctgtccctttaattcatacagaagct
cctatagttggaacaggaatggaattgtatgcagcaagagactcaggttggcttgtggtt
gcaaagagagcaggaatagtagaaaatgttgattcaagaagaattgttataagagttact
gaagaaggtggaggagttgatatatacaatcttgtgaagtttcataaatccaatcaaggc
acatgcatgactcaaaagcctattgttaaagtgggacagacagtagaaagaggaacaatc
cttgctgatggtccttgcatggacaatggtgaattggctcttggcagaaatgttcttgtt
gcttttatgccatggggtggatataactttgaggatgctatactggtcagtgagagactt
gtcaaagaggatgtttatacttccattcacatagacgaatttgagattgaatgcagagat
acaaaactcggtccagaggagattacaagagaaattccaaatgttaatgaagaactgtta
aaaaatcttgatgaagatggaattataagaataggtgcaaaggtaaaagctggagatatt
cttgttggaaaagtaacacctaaaggagaaagggttcttactcctgaagaaaaactttta
tatgcaatatttggtgagaaggcagaagatgttaaggaaagctgtctttatgttccacca
ggtattgagggagttgttattgatgtaaaaattctaacaagaaagggtaaagaaaaatcc
agaagagcaaatgctatagaagaagaagaaataaaaagaatagaaagagatagagaagat
gaaatcaggattcttaaagagacaaaggcaagtagaatcagaaaaattcttaaaggtaag
attatacttgaagatgtaaaaaaaggtgaaaagataatatgtcctaaaggaaaagcactt
acagaaaaagttgttaatctccttgatgtaaatcaactgctcaaacttaaagtagaagac
cctgatgttaaagcggaagtaagcagagttaacaaggaggtggaacagaatataaaacag
atttatgcaaaatacaatgaaaaaattgaaagaattaaaaaaggcgatgaacttccacca
ggtgttaatcaaatagttaaagtttacattgctatgaaaagaaaaatacaagttggagac
aaaatggcaggcagacacggaaataagggcgttgtttccatgattctacctgaagaggac
atgccgtatcttgaagatggaacacctgttgatatagtacttaatcctcttggagttcct
tcaagaatgaatgtgggacagattcttgagactcatttaggtcttgctgcaaaggctctt
ggtctttatgttgcaagccctgtttttgaaggtgcaaaagaggatgaaataaaggaaatg
ttcagaaaagttggctacccaacaacaggacaggtaacgctttatgatggaaaaacagga
gaaccctttgaaagacctgttacagtcggatatatgtatatgcttaagttacatcatctt
gtggcagacaaaattcatgctcgttccataggtccttattccttggtaacccagcaacct
cttggaggaaaggcacagtttggaggacagaggcttggtgagatggaagtatgggcattg
gaagcatatggagcagcatatacgcttcaggaatttttaactgtaaaaagtgatgatata
acaggtagaacacgtatgtatgaagctattgttaaaggacatcctgtattggagccagga
gttcctgaatcatttaatgttttaataaaagagctccagagtttatgtcttgatgtagat
cttctggagaaaaagaaaaaagttgaacggtttcaatga
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integrated database retrieval system
