Thermodesulfovibrio yellowstonii: THEYE_A1750
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Entry
THEYE_A1750 CDS
T00775
Name
(GenBank) replication factor C subunit
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tye
Thermodesulfovibrio yellowstonii
Brite
KEGG Orthology (KO) [BR:
tye00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tye03016
]
THEYE_A1750
Enzymes [BR:
tye01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
THEYE_A1750
Transfer RNA biogenesis [BR:
tye03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
THEYE_A1750
Prokaryotic type
tRNA splicing ligases
THEYE_A1750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CysS_C
Motif
Other DBs
NCBI-ProteinID:
ACI21826
UniProt:
B5YH51
LinkDB
All DBs
Position
1679238..1680686
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AA seq
482 aa
AA seq
DB search
MPKIEGTERIDLYRIRVPKGFVPGMKTEGIIFVDETLEQELELESVRQVANVATLPGIVG
KSLAMPDIHTGYGFPIGGVAAFDVEEGVISPGGVGYDINCGVRLLKSNLTKEEVEPKIRE
LIDLLYAHIPSGVGSTGKIKLSPKDEREVIKKGAIWAVEQGFGDAEDLQRIESHGCLEGA
DPDAISQKAYERGRAQQGTLGSGNHFLEVQYVAEVYEPEIATVMGLSKGQVTVMIHTGSR
GFGHQICDDYVRVMLQAAKKYGIELPDKELACVPFRSREGQQYFSAMKGAANYAWANRQC
LMHWTREVFLRLFNLSPKDLGMKVVFDVAHNIAKEEFHFINGERKRLIVHRKGATRAFPN
GHPELPDCYKDIGQPVLIPGDMGRVSFVLVGLPKAMEETFGSTCHGAGRLLSRNQAIKQA
RGRSIKQELAERGIIVRSAGKETLAEEMPDAYKDVSNVVDVVHNAGIARKIVKLKPMGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaattgaaggaacagaaagaatagacctttatagaataagagttcccaaagga
tttgtgcctgggatgaaaactgagggaattatctttgttgatgaaacccttgagcaagag
cttgagcttgaatcagtacgtcaggtggcaaatgttgccacattaccgggaatagttggg
aaatcccttgcaatgccagatattcatacaggctacggatttcccataggaggtgttgct
gcctttgatgtagaagagggagtgatatcaccgggaggagtcggatacgacattaactgt
ggggtgcggttattaaaaagcaatcttactaaggaagaagtggagccaaaaatccgtgaa
cttattgatcttctctatgctcacattccctcaggagttggctcaacaggaaaaataaag
ctttcgccaaaggatgaacgagaagtaataaagaaaggtgctatctgggcagttgagcaa
gggtttggtgatgcagaagaccttcaaaggattgaatctcatggatgtcttgaaggagca
gaccctgatgccataagccagaaagcctatgagagaggaagagctcagcagggcacactt
ggttcaggaaaccactttcttgaggttcagtatgtggcagaggtgtatgaacctgagata
gccacagttatggggctttcaaagggacaggttacagtcatgattcatacaggttcaaga
ggatttggacatcagatttgtgatgattatgtaagggtgatgcttcaggcagcaaaaaaa
tacggaatagaacttcctgataaagaacttgcctgtgttcctttccgtagcagagaggga
cagcagtatttttccgcaatgaaaggtgcagctaactatgcttgggcaaacagacagtgt
cttatgcactggacaagggaagtatttctcaggctttttaacctttcaccaaaagactta
ggcatgaaagttgtttttgatgtagcacacaatattgcaaaagaagaattccattttata
aatggtgaacgaaagaggcttattgttcatagaaaaggtgctacaagggcttttcctaac
ggacatcctgagttgcctgattgctataaagacattggacagccagtgctaattccagga
gatatgggaagagtttcttttgttctggtaggacttccaaaggcaatggaagaaaccttt
ggttcaacttgtcatggagcaggtaggcttctaagtagaaatcaggcaattaagcaagca
aggggacgttcaataaaacaagagttggctgaaagaggtataatagttaggtctgctggc
aaagaaactcttgcagaggaaatgcctgatgcttataaagatgtatcaaatgttgttgat
gtagttcacaatgctggtatagccagaaaaattgtaaaactaaaaccaatgggagtaata
aaaggatga
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