Thiomicrolovo zhangzhouensis: WCX18_02005
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Entry
WCX18_02005 CDS
T11199
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tzh Thiomicrolovo zhangzhouensis
Pathway
tzh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tzh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WCX18_02005 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tzh03021
]
WCX18_02005 (rpoC)
03400 DNA repair and recombination proteins [BR:
tzh03400
]
WCX18_02005 (rpoC)
Enzymes [BR:
tzh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WCX18_02005 (rpoC)
Transcription machinery [BR:
tzh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WCX18_02005 (rpoC)
DNA repair and recombination proteins [BR:
tzh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WCX18_02005 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Hac8_like_N
Motif
Other DBs
NCBI-ProteinID:
XAU00667
LinkDB
All DBs
Position
383024..387532
Genome browser
AA seq
1502 aa
AA seq
DB search
MSKLVPIEVTEENRPKDIKQLQFRLASPEKILSWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTTSKVRRTRMGHIDLVTPVAHIWYVSS
LPSRIGTLLGVKMKDLERVLYYEAYIVKSGGEAYYDAEQSAPVIKYDVLNEEQYRTLNQR
YSESGFVAQMGGEVIRDLLDDIDLVELFSVLKEEMEGTRSEAKRKTIVKRLKVIESFLNS
GNNPAWMMLSVLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNQRLKRLIELEAPEI
IVRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEVIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPDLKMDQCGLPKKMALELFKPHLIAKLEDKGYATTVKAAKKMIEDKTNEVWE
CLSEIVEGYPIMLNRAPTLHKLSIQAFHPRLIEGKAIQLHPLVCAAFNADFDGDQMAVHV
PLSAEAIAEAKVLMLSSMNILLPASGKAIATPSQDMVLGIYYLSLEKNGVVGSNKLFANV
DEIRIALEQSSLDLHARIRTRVDGRMITTTVGRLLIKEILPSFVPVDLWNRVMKKKAINA
LVDYVQKYGGIAVTAGFLDRLKNLGFKHATAAGVSISVDDVIVPEEKPELIAQSKAKVKE
IQKQYEAGLLTEQERYNKIIDVWTDVNNTLAGDMMTLIENDKAGFNSIYMMADSGARGSA
AQIRQLAGMRGLMAKPDGSIIETPIISNFKEGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLVDVAQNVKIVEDDCGSHEGIEITDISIGNEMIEPLEDRIYGRVLAEDAIDPITN
EILYPEGELIDEIKASKIVEAGIKSVHIRTPATCKSEGGVCALCYGKNLGTGELVRKGEA
VGIIAAQSIGEPGTQLTLRTFHVGGTASSTREERQVVATKKGFIRYYNLKTYKNQEGKNI
VANRRNAGVLLVEPKIKAPFDGTIDVQTIHDEVLVSVSNGEQTQRYTLRKTEVARPNELA
GVSGKIEGKFYLPYDSGAKVVAHESIVETIRDGWNVPNRIPYASELLVDDGAPVTQRVEA
GAKGTVKFFLLKGDYLERYDAISKGYEVTEKGLFAVVVDADDREANRHYIARGSIVDIDD
DAEAEAATVIAHAATAESLVIAEWDPYSNPIISEAAGTVKFEDVIPGVTASEQFDELTGK
TRLMINEYISPEYKPAIVLATEAGELIRYSLEPKTAVFAQNNATVNVADILAKTPKALQK
SRDITGGLPRVSELFEARKPKDVALIAEVDGVVSFGKPLRGKERIVITGENGIIKEYFVD
KNQNALVHPGEFVHAGERLSDGMVSSHEILRILGVKALYNYLVSEVQQVYRRQGVNIADK
HIEVIFTQMIRQVKIVKSGDTKFIQGDLVSKNRFKEENEKILRLGGEPAIAEPFLVGITR
ASVSADSIISAASFQDTTKVLTEAAVSAKIDDLTDMKENVIIGRTIPAGTGMYKDYTIDF
ES
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaattagtgccgattgaagtaacggaagagaatcgcccgaaggacattaaacag
ctgcagttccgcctggcgagcccggagaagatcctctcctggagccacggcgaagtcaaa
aagccggagacgatcaactaccgtaccctgaaaccggaacgcgacggtctgttctgcgcg
aagatcttcggaccggtccgcgattacgagtgtctgtgcggcaagtacaagaagatgcgc
tacaagggcgtcgtctgtgagaagtgtggcgttgaggtcacgacttccaaagtccgccgt
acgcgcatgggtcatatcgacctggtcacgccggtcgcgcacatctggtatgtcagctcc
ctgccgagccgtatcggtacgctcctgggtgtcaagatgaaagacctcgagcgcgtactc
tactacgaggcgtacatcgtcaaaagcggcggtgaagcgtactacgatgcggaacagagc
gcaccggtcatcaagtacgacgttctcaacgaagagcagtaccgtaccctgaaccagcgc
tacagcgagagcggttttgtcgcccagatgggtggtgaggttatccgtgacctgctcgac
gacatcgacctcgtcgagctcttctccgtcctcaaagaggagatggaggggacccgttcc
gaagcgaagcgcaaaacgatcgtcaagcgcctgaaggtcatcgaatccttcctgaactcc
gggaacaacccggcgtggatgatgctctccgtgctgccggtcctgccgccggatctgcgt
ccgctggtcagcctggacggcggcaagttcgccgtctcagacgtcaacgacctctaccgc
cgtgttatcaaccgtaaccagcgtctgaagcgcctgatcgagctcgaagcgccggaaatt
atcgtccgcaacgagaagcgtatgcttcaggaatccgtcgatgccctcttcgacaacggc
cgccgtgccaatgccgtcaagggtgccaacaagcgtccgctgaaatccctttcagaagtc
atcaagggcaagcagggacgtttccgtcagaacctcctcggtaagcgtgtcgacttctcc
ggccgttcggtcatcgtcgtcggtccggacctcaagatggaccagtgcggtctgccgaag
aaaatggcccttgaactcttcaagccgcacctgattgcgaagctcgaagataaagggtac
gcgacaacggtcaaggctgccaagaagatgatcgaggacaaaaccaacgaggtttgggag
tgtctctccgagatcgtcgagggctacccgatcatgctcaaccgtgcaccgacgctgcac
aaactctcgatccaggccttccacccgcgcctgatcgaagggaaagcgatccagctgcac
ccgctcgtctgtgcggccttcaacgccgacttcgacggtgaccagatggcggtccacgtg
ccgctctccgccgaggcgattgcggaagcgaaagttctgatgctctcatccatgaacatt
ctgctcccggcctccggtaaagcgatcgcgacaccgtcgcaggatatggtcctcgggatc
tattacctctccctggagaagaacggtgtcgtcggctcgaacaagctgttcgccaacgtc
gacgagatccgcatcgcactggagcagagctcgcttgacctgcatgcacgtatccgtacc
cgtgtcgacggccgtatgatcacgacgacggtcggccgcctcctgatcaaggagatcctg
ccgtccttcgttccggtcgacctgtggaaccgcgtcatgaagaaaaaagcgatcaacgct
ctggtcgactacgtccagaagtacggcggcatcgctgtcaccgcgggcttcctcgaccgt
ctgaaaaacctcggtttcaaacacgcgacggcggcgggggtctccatctccgtcgacgac
gttatcgtcccggaagagaagccggaactgatcgcgcagtccaaagcgaaggtcaaggag
atccagaagcagtacgaagcgggtcttctgaccgagcaggaacgctacaacaagatcatc
gacgtctggaccgacgttaacaatacgcttgcgggcgatatgatgacgctgatcgagaac
gacaaagcgggcttcaactccatctacatgatggccgactccggggcgcggggttccgcg
gcccagatccgtcagctcgcgggtatgcggggtcttatggcgaagccggacggctcgatc
attgagacgccgattatctcaaactttaaagagggtctgaacgtccttgagtacttcatt
tcgacccacggtgcccgtaaaggtctcgccgacaccgcgctgaaaacggcgaatgccggt
tacctgacgcgtaaactcgtcgatgtcgcgcagaacgtgaagatcgtcgaggacgactgt
ggttcccacgaagggatcgagatcacggacatctccatcggtaacgagatgatcgaaccg
cttgaagaccgtatctacggccgtgtcctcgccgaggacgcgatcgacccgatcaccaac
gagatcctctatccggagggtgagctgatcgacgagatcaaggcgagcaaaatcgtcgaa
gcgggcatcaagtccgtgcatatccgtacgccggcgacctgtaagtccgaaggcggcgtc
tgtgcgctctgctacggtaaaaacctcggaacaggcgaactggtccgcaagggcgaggcc
gtcggtattatcgcggcacagtcgatcggggaaccgggtacgcagctgacgcttcgtacc
ttccacgtcggtggtacggcgtccagcacccgtgaagagcgccaggttgtggcaacgaag
aaaggtttcatccgctactacaacctgaaaacctataagaaccaggaaggcaagaacatc
gtcgccaaccgccgtaatgcgggtgtcctgctggtcgaaccgaagatcaaggcgccgttt
gacggtacgatcgacgttcagacgatccacgacgaggttctggtcagcgtcagcaacggg
gaacagacacagcgctataccctgcgcaagaccgaggttgcccgcccgaacgaactggcc
ggcgtcagcggcaagatcgaagggaagttctacctgccgtacgacagcggcgcgaaagtc
gtcgcccatgagtcgatcgtcgagacgatccgtgacggctggaacgttccgaaccgtatc
ccgtacgcttccgagctgctcgtcgacgacggcgcaccggtaacacagcgtgtcgaagct
ggcgcgaaaggtacggtcaagttcttcctcctcaaaggggattaccttgagcgctacgac
gcgatcagcaaaggctacgaagtcaccgagaagggacttttcgccgtcgtcgtcgacgct
gatgaccgtgaagcgaaccgccactacatcgcccgcggctccatcgtcgatatcgacgat
gatgccgaggcggaagcggcaacggtcattgcccacgcggcaacggccgaatcgctcgtc
atcgccgagtgggacccttattccaacccgatcatctccgaagcggccggtacggtcaag
ttcgaagatgtcatcccgggcgtcacggcgtccgagcagttcgacgaactgacgggcaaa
acgcgtctgatgatcaacgagtacatctctccggaatacaaaccggcgatcgtgctcgcg
acggaagccggcgagcttatccgttattcgctcgagccgaaaacggcggtcttcgcccag
aacaacgcgacggtcaacgtcgccgacatcctggcgaaaacaccgaaagcgctccagaag
tcacgcgacattaccgggggtctcccgcgcgtttccgagctcttcgaagcccgtaagccg
aaagatgtcgccctcatcgcagaggttgacggtgtcgtcagcttcggcaagccgctgcgc
gggaaagagcgtatcgtcattaccggcgaaaacggcatcatcaaagagtactttgtcgac
aagaaccagaacgccctggtccacccgggcgaattcgttcacgccggcgaacgtctctcc
gacggtatggtctcgagccacgagatcctgcgtatcctcggagtcaaggcactgtacaac
tacctggtcagcgaagtccagcaggtctaccgccgccagggggttaacattgcggacaaa
cacatcgaggtcatctttacccagatgatccgccaggtcaagatcgtcaaatccggcgat
acgaagttcattcagggcgacctcgtctcgaagaaccgcttcaaggaagagaacgagaag
atcctgcgcctcggcggcgagccggcgattgccgagccgttcctggtcggtatcacccgt
gcctccgtcagtgcggactccatcatctccgcggcgtccttccaggataccacgaaggtc
ctcactgaagcggccgtctctgcgaagatcgacgacctgaccgatatgaaagagaacgtc
attatcggtcgtacgatcccggccggtaccggtatgtacaaagactacacgatcgacttc
gaatcgtaa
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integrated database retrieval system
