Thiomicrolovo zhangzhouensis: WCX18_02555
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Entry
WCX18_02555 CDS
T11199
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tzh Thiomicrolovo zhangzhouensis
Pathway
tzh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tzh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WCX18_02555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tzh03400
]
WCX18_02555
Enzymes [BR:
tzh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WCX18_02555
DNA repair and recombination proteins [BR:
tzh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WCX18_02555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XAU00774
LinkDB
All DBs
Position
501207..504191
Genome browser
AA seq
994 aa
AA seq
DB search
MQAKLYAYLKKGGLPDVLICEDAAEAQQLRDLCRFKEIDAVVLPDFRATWLDDLRPFSEE
LSQMAEALRHYYEADKKPLVIAPFKSLLFPLPKTHLLRTKQIAFGDRLDLGALKTELLHW
GYSFVDLVEVEGEVSFRGDIIDVFAPGTESPYRISLFDDEIEQIKAFEVETQRTVGEELE
GFELHSAPYAFDEAGYERIVAAVEASTSDSFVKDIDSLGFWYLGDDAENFLEGKKVAAVK
RLDAMIGEAYTLNTPQVPQGVFESVAVLPEDDRVKALAVTDVKTLLEVHPNKKVTIIASS
DAQLKQAGLFDTRGLTVKRSGEIVNLITDTELIISLNKPVRKKRRRKSSLLLDDLKPGDY
VVHEDHGVGIFEAIEQAEILGSVRDFIAIRYQGDERVLLPVENLDAIDRYIAGAGAPPVL
DRLGKGSFGRLKETVRKRLFEIASEIVNTAAQRALISAPVIETDAKKLAAFQAEAGFEYT
EDQARSIAEIIAEIGSGLVMDRLLSGDVGFGKTEVAMNAMFAAAQAGYQSAVIVPTTLLS
SQHFASLKARFAEYDFRIAKIDRFVTPKVKKAVEAGLAEGTIDMVVGTHALFGTKFAKLG
LVVIDEEHKFGVKQKEKLKTLYEKTHLLTMSATPIPRSLNQALSSIKTLSTLMTPPGERQ
GVRTFVKAYDEKLVKEVILRELRRGGQVFYVYNSIDHMPIKLGELKAILPDLRILMLHSQ
VGAVETEKELLKFQDGEYDLMLATSIIESGIHMPRVNTMIIDGADRFGIADLHQLRGRVG
RGHTEGYAYFIVEDKELITEEAKKRLIALESNSFLGSGSVLAYHDLEIRGGGNLVGDAQS
GHIKNIGYSLYLRMLEDAIKELSNKKETPKAKVDLKLAVSAYISDELVAEDRLRLELYRR
LSLCETPTEVYEIEEEVTERFGRPDGPTKQFFELMVIKLMGLEKHIKMLSSYGQNITVEY
LSGAKEYVTADSKDDDDIIKAVLHYLRTAKPKVL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccaagctctacgcctacctgaaaaagggtggcctccccgacgttctcatctgt
gaagacgccgccgaagcgcagcagctccgcgacctctgccgcttcaaggagatcgacgcg
gttgtcctccccgatttccgcgcgacctggcttgatgacctgcgccccttcagcgaagag
ctgagccagatggccgaggcgctgcggcactactacgaggcagacaagaagcccctcgtc
atcgcgccgttcaagagcctgctcttcccgctgcccaaaacgcacctgctgcgcacgaag
cagatcgccttcggcgaccgcctcgacctaggagccctcaagacggagctgctgcactgg
ggctacagctttgtcgacctcgtggaggtggagggggaggtctccttccgcggcgacatc
atcgacgtcttcgcccccggtacggaaagcccctaccgcatctccctcttcgacgacgag
atcgagcagatcaaggccttcgaggtggagacccagcgcaccgtcggcgaggagctggag
ggcttcgagctgcacagcgccccctacgcctttgacgaggccgggtacgagcgcatcgtc
gccgccgtcgaagcctcgacgagcgacagcttcgtcaaggacatcgactccctgggcttc
tggtacctgggcgacgacgccgagaacttcctcgagggcaaaaaggtcgccgccgtcaaa
cgcctcgacgcgatgataggcgaggcctacaccctcaacaccccgcaggtgccgcagggc
gttttcgaatccgtcgcggtgctccccgaagacgaccgggtcaaggccctcgcggtcacc
gacgtcaaaaccctgctggaggtccacccgaacaagaaggtgaccatcatcgccagcagc
gacgcgcagctgaagcaggcgggcctctttgacacgcgggggctcaccgtcaaacgctcc
ggcgagatcgtcaacctcataaccgacaccgagctcatcatctcgctgaacaaaccggtg
cgcaaaaagcgccgccgcaagagcagcctgctcctcgacgacctcaagcccggcgactac
gtcgtccacgaggatcacggggtcgggatcttcgaggccatcgagcaggcggagatcctg
ggctcggtgcgcgacttcattgccatccgctaccagggcgacgagcgggtcctgctgccg
gtggagaacctcgacgccatcgaccgctacatcgcgggcgccggggcgccgccggtgctc
gaccgcctgggcaaggggagcttcggacgcctcaaggagaccgtgcgcaaacgcctcttc
gagatcgcctcggagatcgtcaacacggccgcccagcgtgcgctcatcagcgcccccgtc
atcgagaccgatgccaaaaaactggcggcgttccaggcggaggcgggcttcgagtacacc
gaggaccaggcgcgctccatcgccgagatcatcgccgagatcggcagcggcctcgtcatg
gaccggctcctcagcggggacgtcggcttcggcaagaccgaggtggcgatgaacgcgatg
ttcgccgcggcacaggcggggtaccagtcggccgtcatcgtgccgacgaccctgctgagc
tcccagcacttcgcctcgctcaaggcgcgcttcgccgagtatgacttccgcatcgccaag
atcgaccgcttcgtcacgccgaaggtgaagaaggccgtcgaggcggggctggccgagggg
accatcgacatggtcgtcggcacccacgcgctcttcggcacgaagttcgccaagctgggc
ctcgtcgtcatcgacgaagagcacaagttcggggtgaagcagaaagagaagctgaaaacc
ctctacgagaagacgcacctgctcaccatgagcgccacgccgatcccgcgcagcctcaac
caggcactctcttccatcaagaccctcagtaccctcatgacccctccgggtgaacggcag
ggggtaaggaccttcgtcaaggcctacgacgaaaagctcgtcaaagaggtcattttgcgc
gagctgcgccggggtgggcaggtcttttacgtctacaactccatcgaccacatgccgatc
aagctgggcgagctcaaggccatcctcccggacctgcgcattttgatgctccactcgcag
gtgggcgccgtcgagacggagaaagagctgctcaagttccaggacggcgagtacgacctc
atgctcgcgacttccatcatcgagtcgggcatccacatgccgcgggtcaacacgatgatc
atcgacggggcggaccgcttcggcatcgccgacctgcaccagctccgcggccgcgtcggc
cggggccatacggaggggtatgcctacttcatcgtcgaggacaaggagcttattaccgag
gaggcgaagaagcgcctcatcgccctggagtcgaactccttcctcggcagcggttccgtg
ctggcctaccatgacctcgaaatccggggcggggggaacctcgtgggcgacgcgcagagc
ggccacatcaagaacatcggctactctctctacctgcggatgctcgaggacgccatcaag
gagctgagcaacaagaaagagacgcccaaggcgaaggtggacctcaagctcgccgtcagt
gcctacatcagcgacgagctcgtcgccgaggaccgcctgcgcctggagctctaccgccgc
ctcagcctctgcgagaccccgacggaggtctacgagatcgaggaggaggtcacggagcgc
ttcggacgcccggacggcccgacgaagcagtttttcgagctgatggtcatcaaactgatg
gggctggagaagcacatcaagatgctcagctcctacggccagaacatcacggtagagtac
ctgagcggcgctaaagagtacgtcaccgccgacagcaaagacgacgacgacatcatcaag
gcggtcctgcactacctgcgcacggcgaaaccgaaggtgctgtaa
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