Thiomicrolovo zhangzhouensis: WCX18_10575
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Entry
WCX18_10575 CDS
T11199
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tzh Thiomicrolovo zhangzhouensis
Pathway
tzh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tzh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCX18_10575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tzh03019
]
WCX18_10575
03009 Ribosome biogenesis [BR:
tzh03009
]
WCX18_10575
Enzymes [BR:
tzh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WCX18_10575
Messenger RNA biogenesis [BR:
tzh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WCX18_10575
Ribosome biogenesis [BR:
tzh03009
]
Prokaryotic type
rRNA helicases
WCX18_10575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Clathrin
Flavi_DEAD
Poxvirus_B22R_N
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XAT99848
LinkDB
All DBs
Position
2060717..2062231
Genome browser
AA seq
504 aa
AA seq
DB search
MQTPPIETLDDTAAATASFDDFGLRDEILQSIRYAGFKVPSPIQQQAIPLILEGRDVVGQ
AHTGTGKTAAFGLPTLSKLSLDRGVEALIIVPTRELANQVSDELFKYGKKLGIHTVTVYG
GSSYNRQIGLIERGAQVVIATPGRLKDILERNMLSDFAPSTVILDEADEMLDMGFLDDIN
TIFDFLPTDRQTLLFSATMPKPIKALAERILVEPAFVSITQEETTNKDIAQQYYVIEENE
RDDAIIRLLDAEELEKTIVFCRTKREVDRLSNVLSSVGYNAKGLHGDMEQRQRESVIRGL
KENAIDILVATDVAARGIHINDVSHVINYHIPFDPESYVHRIGRTGRAGQKGVAITLVTP
LEFKELQRIRKIVGTQMAHSYIPTKQQVQSKQMSRLVDEIEKQKIYEEATELFNALCDDM
DQTQIAYRLISLLMKNMNVKGPQTIGVPKQRLDKIMEAMERNERGGGGGRRGSGKPRRNG
GFNNRRRQDGDRNRGDRNRGGRRS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaccacccatcgaaacactcgacgataccgccgcagcgacggcctcctttgac
gacttcggtcttcgcgacgagatcctccagagcatccgctacgccggtttcaaagtcccc
agccccattcagcagcaggccatccccctcatcctcgaggggcgcgacgtcgtcggccag
gcccatacgggtaccggtaaaacggcggctttcggtctgccgaccctgagcaagttgagc
ctcgaccgcggcgttgaggcgctcattatcgtcccgacacgcgaactcgcaaaccaggtg
agcgacgagcttttcaaatacggcaaaaagctcggcattcacacggtcaccgtctacggc
ggcagctcctacaaccgccagatcggcctgatcgaacgcggcgcgcaggtcgtcatcgcg
accccgggccgcctcaaagacatccttgaacgcaacatgctcagcgatttcgccccgtcc
accgtcatccttgacgaagcggacgaaatgctcgacatgggcttcctcgacgacatcaac
acgatcttcgacttcctgccgacggaccgccagaccctgctcttttcggccacgatgccc
aaaccgatcaaggctcttgccgaacgtatcctcgtcgagcccgccttcgtctccatcacc
caggaggagacgacgaacaaagatatcgcacagcagtattacgtcatcgaggagaacgag
cgcgacgacgcgatcatccgcctgctcgacgccgaagagctggaaaagacgatcgtcttc
tgccgcaccaagcgcgaagtcgaccgtctctccaatgtgctctcctccgtcggctacaac
gccaaggggctccacggcgacatggaacagcgccagcgcgaatccgtcatcaggggtctc
aaagagaatgcaattgacattcttgtcgccaccgacgttgcggcgcgcgggatccacatc
aacgacgtcagccacgtcatcaactaccacattcccttcgatccggagagctacgtccac
cgtatcggccggacgggacgcgcaggccagaaaggggtcgccattaccctggtaacgccg
ctggagttcaaagagctgcagcgtatccgcaagatcgtcggcacccagatggcccactcc
tacatcccgacaaaacagcaggtgcagtccaaacagatgtcccgccttgtcgacgagatc
gaaaaacagaagatctacgaagaagcgaccgaactctttaacgcgctgtgcgacgacatg
gaccagacacagatcgcctaccggcttatctccctgctgatgaagaacatgaacgtcaaa
ggaccgcagacgatcggtgtccccaaacagcgcctggacaaaatcatggaagcgatggag
cgcaacgaaagaggaggcggaggcggacgccgcggcagcggcaaaccgcgccgaaacggc
ggcttcaacaaccgccggcgccaggacggcgaccgcaaccggggcgaccgcaaccgcggc
ggacgtcgctcctaa
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