Thiomicrolovo zhangzhouensis: WCX18_12625
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Entry
WCX18_12625 CDS
T11199
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tzh Thiomicrolovo zhangzhouensis
Pathway
tzh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tzh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCX18_12625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tzh03019
]
WCX18_12625
Messenger RNA biogenesis [BR:
tzh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WCX18_12625
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
RMMBL
Lactamase_B_6
MupG_C
DUF6624
Motif
Other DBs
NCBI-ProteinID:
XAU00234
LinkDB
All DBs
Position
complement(2467993..2470092)
Genome browser
AA seq
699 aa
AA seq
DB search
MSEETQAPVAEAKQNTENKPAQNRDGSQRRRSSSRSRSRSRQKPKEGEAKKEGEGQSQNR
NRGGRGGNRGENRGENRGENRSENRGESRGENRGENRGKTGGGRSGGSRNRRRNAPAPTE
QSLLENARQNEASQRVRINPHMNIDTEVKAKVRITPLGGLGEIGGNMMVMETDNEAILID
VGMSFPDEEMHGVDILVPDFTYVREIKDKIVGVIITHAHEDHIGAVPYLYKEMQFPLYGT
ALPLAMIGNKFDEHHLKEFRRYFRPIEKRVVYQIGNDFQIEWMHMTHSIIDSSSIAVTTE
AGTIIHTGDFKIDHTPVDGFPADLHRLAHYGSQGVLALLSDSTNSYNSEVTPSELSVAPA
LDRVFSKTKGRIILSTFSSNIHRVFQAIQAGIKYGRKVCVIGRSMERNLEVAMQYEYIKL
PKNIFVDADDVSRMNDKDVLIVTTGSQGEPNSALFRTAIGEHRHIKIKPNDLIILSSRAI
PGNEGSISQMLNHLERAGAKVARDRDLHVSGHGGAEEQKLVLRLVQPKFFLPIHGEYNHV
MRHRDTGIACGVPERNIYLMSDGECVEIAPKYMRKVKTVKSGKTYIDNQSNNLIEDDIVI
DRQKMATEGMVMIIAQVSKADSHLISKPKVSSFGLVPDKQDKAFAQEMEDVLEHFLTNLK
PGIIENPKAMENDLRQVVRKHIYRKMKKYPLITPTIFVM
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagaaacacaagcccctgtcgcagaagcgaaacaaaatacagagaacaaaccg
gcacagaaccgcgacggctcacagcgccgccgctcttccagccgcagccgcagccgcagc
cgccagaaacccaaagagggtgaagcgaaaaaagagggcgaaggtcagagccagaaccgc
aaccgcggcggccgcggcggcaaccgcggggagaaccggggtgaaaaccgtggagagaac
cgtagcgaaaaccgcggagagagtcgtggggaaaaccgtggcgaaaaccgcggtaaaacc
ggcggcggacgttccggcggcagccgcaaccgccgccgcaacgctccggcaccgacggag
cagagcctgctggaaaatgcacgccagaacgaggcgtctcagcgcgtccgtatcaacccg
catatgaatatcgacacggaagtgaaggcgaaggtccgcatcactccgctgggcggtctc
ggcgagatcggcgggaacatgatggtcatggaaacggataacgaagcgatcctgatcgac
gtgggaatgagcttcccggacgaagagatgcacggcgtcgatattctcgtcccggacttc
acctatgtccgcgagatcaaagacaagatcgtcggtgtcatcattacccacgcccacgaa
gaccacatcggcgcggtaccctatctctataaagagatgcagttcccgctctacggtacg
gcgcttccgctggcgatgatcggcaacaaattcgacgagcatcacctcaaagagttccgc
cgctacttccgcccgattgaaaagcgcgtcgtctaccagatcgggaacgatttccagatc
gagtggatgcacatgacgcactccatcatcgactcctcttcgatcgcggtgacgacggaa
gcgggaacgatcatccatacgggtgacttcaagatcgaccatacccctgttgacggtttc
ccggcggacctgcaccgtctggcgcactacggcagccagggtgttctggcactgctttcg
gattcgacaaactcgtacaacagcgaggtgacaccgagcgagctctccgtcgccccggcg
ctcgaccgcgtcttctccaagacgaagggtcgtatcattctttcgacgttcagttcgaac
attcaccgcgtcttccaggcgatccaggcggggatcaagtacgggcgcaaggtctgtgtc
atcggccgctccatggagcgcaacctcgaagtggcgatgcagtacgaatacatcaagctg
ccgaagaacatcttcgtggatgccgacgatgtcagccgcatgaacgacaaggacgttctg
atcgtcacgacaggttcacagggtgagcccaactcggcactgttccgcacggcgatcggc
gagcaccgccatatcaagatcaagccgaacgacctgatcattctctcttcccgcgcgatc
ccggggaacgaaggttctatttcgcagatgctcaaccacctcgagcgtgccggtgccaaa
gtcgcgcgcgaccgtgacctccacgtttccggtcacggcggcgcggaagagcagaaactg
gtgctgcgcctggtgcagccgaagttcttcctcccgatccacggcgaatacaaccacgtt
atgcgccacagagatacggggatcgcctgcggggtaccggagcgcaatatctacctgatg
agcgacggcgaatgcgtcgaaatcgcaccgaagtacatgcgcaaggtcaaaacggtcaag
tccggcaagacctacatcgacaaccagagcaacaacctgatcgaagacgatatcgtcatt
gaccgccagaagatggcgacggaggggatggtgatgatcatcgcccaggtcagcaaggcg
gattcacacctgatctccaagccgaaggtcagcagtttcggcctggtgccggacaagcag
gacaaagctttcgctcaggagatggaagacgtcctcgaacacttcctcaccaacctcaaa
ccggggatcatcgaaaaccccaaagcgatggagaacgatctgcgccaggtcgtacgaaag
catatctatcgcaaaatgaaaaagtacccgctgattacaccgaccatctttgtgatgtga
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